Nemat Ali , Salim S. Al-Rejaie , M. Arockia Babu , Prashant Nayak , VenuPrasad KD , Mohamed Mohany , Thakur Gurjeet Singh , Mohammad Suhail Akhter , Mohammad Fareed , Yogita Tyagi , Nisha Bansal , Sarthak Puri
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To this end, we curated 134 bioactive constituents derived from spices. These were subjected to high-throughput virtual screening (HTVS) considering the pharmacophoric features of the NMDA receptor. Molecular docking, followed by molecular mechanics and dynamics, indicated that curcumin and quercetin could plausibly bind to the NMDA receptor in comparison to memantine. In vitro ELISA-based analysis revealed that curcumin may inhibit the NMDA receptor with an IC50 of 2.36 μM compared to memantine's 736.48 nM, employed as a positive control. However, targeting the neuronal receptor NMDA requires that the ligand efficiently cross the blood-brain barrier (BBB). To overcome this challenge, we performed a rational bioisosteric replacement strategy to potentially optimize the pharmacokinetic features of curcumin without affecting its NMDA binding. We generated 150 bioisosteres of curcumin, and through extensive computational analyses, the top 5 scoring molecules were further validated via a molecular dynamics approach. However advantageous, in the present work, curcumin or its proposed derivatives have not been corroborated by extensive biological investigation. It is a prototype study to identify the druggable leads from the spices that have the potency to interact and inhibit NMDA. Owing to this, the mechanism of action is not fully elucidated. Further, the work upon validation (biologically) may serve as a useful pharmacophore (tool molecule) using which NMDA may be downregulated. The designed derivatives thus open avenues to synthesize and biologically test them against NMDA inhibition, plausibly establishing their roles in Alzheimer's and related disabilities.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"130 ","pages":"Article 118378"},"PeriodicalIF":3.0000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring the bioactive constituents from spices targeting N-methyl-d-aspartate receptors: An in silico and in vitro approach to identify druggable leads against neurological disability\",\"authors\":\"Nemat Ali , Salim S. Al-Rejaie , M. 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However advantageous, in the present work, curcumin or its proposed derivatives have not been corroborated by extensive biological investigation. It is a prototype study to identify the druggable leads from the spices that have the potency to interact and inhibit NMDA. Owing to this, the mechanism of action is not fully elucidated. Further, the work upon validation (biologically) may serve as a useful pharmacophore (tool molecule) using which NMDA may be downregulated. 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引用次数: 0
摘要
n -甲基-d-天冬氨酸(NMDA)受体是治疗阿尔茨海默病和其他相关神经系统疾病的有效靶点,特别是在残疾人中。考虑到与NMDA受体相关的兴奋性毒性导致神经元损伤、认知障碍,以及当前治疗方案的局限性,需要更好的治疗方案。一种有效的药物发现方法是计算机辅助药物发现,辅以分子对接、力学和动力学。为此,我们从香料中提取了134种生物活性成分。考虑到NMDA受体的药效特征,这些都受到高通量虚拟筛选(HTVS)的影响。分子对接,随后的分子力学和动力学,表明姜黄素和槲皮素可能与NMDA受体结合,而不是美金刚。体外elisa分析显示,姜黄素抑制NMDA受体的IC50为2.36 μM,而阳性对照美金刚的IC50为736.48 nM。然而,靶向神经元受体NMDA需要配体有效地穿过血脑屏障(BBB)。为了克服这一挑战,我们执行了一种合理的生物等容替代策略,以潜在地优化姜黄素的药代动力学特征,而不影响其NMDA结合。我们生成了150个姜黄素生物同位体,并通过广泛的计算分析,通过分子动力学方法进一步验证了得分最高的5个分子。然而,在目前的工作中,姜黄素或其衍生物尚未得到广泛的生物学研究证实。这是一项原型研究,旨在确定香料中具有相互作用和抑制NMDA效力的可药物线索。因此,其作用机制尚未完全阐明。此外,在生物学上验证的工作可以作为一个有用的药效团(工具分子),使用它可以下调NMDA。因此,设计的衍生物为合成和生物学测试NMDA抑制开辟了道路,合理地确定了它们在阿尔茨海默氏症和相关残疾中的作用。
Exploring the bioactive constituents from spices targeting N-methyl-d-aspartate receptors: An in silico and in vitro approach to identify druggable leads against neurological disability
N-methyl-d-aspartate (NMDA) receptors are validated druggable targets for the treatment of Alzheimer's and other associated neurological conditions, particularly in individuals with disabilities. Considering the excitotoxicity associated with NMDA receptors, which leads to neuronal damage, cognitive impairment, and limitations of current therapeutic regimens, better therapeutic candidates are required. One of the validated drug discovery approaches is computer-assisted drug discovery, supplemented by molecular docking, mechanics, and dynamics. To this end, we curated 134 bioactive constituents derived from spices. These were subjected to high-throughput virtual screening (HTVS) considering the pharmacophoric features of the NMDA receptor. Molecular docking, followed by molecular mechanics and dynamics, indicated that curcumin and quercetin could plausibly bind to the NMDA receptor in comparison to memantine. In vitro ELISA-based analysis revealed that curcumin may inhibit the NMDA receptor with an IC50 of 2.36 μM compared to memantine's 736.48 nM, employed as a positive control. However, targeting the neuronal receptor NMDA requires that the ligand efficiently cross the blood-brain barrier (BBB). To overcome this challenge, we performed a rational bioisosteric replacement strategy to potentially optimize the pharmacokinetic features of curcumin without affecting its NMDA binding. We generated 150 bioisosteres of curcumin, and through extensive computational analyses, the top 5 scoring molecules were further validated via a molecular dynamics approach. However advantageous, in the present work, curcumin or its proposed derivatives have not been corroborated by extensive biological investigation. It is a prototype study to identify the druggable leads from the spices that have the potency to interact and inhibit NMDA. Owing to this, the mechanism of action is not fully elucidated. Further, the work upon validation (biologically) may serve as a useful pharmacophore (tool molecule) using which NMDA may be downregulated. The designed derivatives thus open avenues to synthesize and biologically test them against NMDA inhibition, plausibly establishing their roles in Alzheimer's and related disabilities.
期刊介绍:
Bioorganic & Medicinal Chemistry provides an international forum for the publication of full original research papers and critical reviews on molecular interactions in key biological targets such as receptors, channels, enzymes, nucleotides, lipids and saccharides.
The aim of the journal is to promote a better understanding at the molecular level of life processes, and living organisms, as well as the interaction of these with chemical agents. A special feature will be that colour illustrations will be reproduced at no charge to the author, provided that the Editor agrees that colour is essential to the information content of the illustration in question.