Max Franz, Christian T Lopes, Mike Kucera, Veronique Voisin, Ruth Isserlin, Gary D Bader
{"title":"基因集富集分析和可视化在网络上使用富集地图：RNASeq。","authors":"Max Franz, Christian T Lopes, Mike Kucera, Veronique Voisin, Ruth Isserlin, Gary D Bader","doi":"10.1093/bioadv/vbaf178","DOIUrl":null,"url":null,"abstract":"<p><strong>Summary: </strong>EnrichmentMap: RNASeq (enrichmentmap.org) is an intuitive, web-based app for gene-set enrichment analysis and visualization, specifically supporting two-case RNA-Seq experiments for Homo sapiens. The web app introduces a simplified user interface, faster processing times, and eliminates the need for software installation compared to running similar workflows in the Cytoscape desktop software, catering to biologists with minimal computational experience. EnrichmentMap: RNASeq is a new type of Cytoscape web app that is interoperable with Cytoscape.</p><p><strong>Availability and implementation: </strong>The app is available to use at enrichmentmap.org and the source code is available at github.com/cytoscape/enrichment-map-webapp.</p>","PeriodicalId":72368,"journal":{"name":"Bioinformatics advances","volume":"5 1","pages":"vbaf178"},"PeriodicalIF":2.8000,"publicationDate":"2025-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12373637/pdf/","citationCount":"0","resultStr":"{\"title\":\"Gene-set enrichment analysis and visualization on the web using EnrichmentMap:RNASeq.\",\"authors\":\"Max Franz, Christian T Lopes, Mike Kucera, Veronique Voisin, Ruth Isserlin, Gary D Bader\",\"doi\":\"10.1093/bioadv/vbaf178\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Summary: </strong>EnrichmentMap: RNASeq (enrichmentmap.org) is an intuitive, web-based app for gene-set enrichment analysis and visualization, specifically supporting two-case RNA-Seq experiments for Homo sapiens. The web app introduces a simplified user interface, faster processing times, and eliminates the need for software installation compared to running similar workflows in the Cytoscape desktop software, catering to biologists with minimal computational experience. EnrichmentMap: RNASeq is a new type of Cytoscape web app that is interoperable with Cytoscape.</p><p><strong>Availability and implementation: </strong>The app is available to use at enrichmentmap.org and the source code is available at github.com/cytoscape/enrichment-map-webapp.</p>\",\"PeriodicalId\":72368,\"journal\":{\"name\":\"Bioinformatics advances\",\"volume\":\"5 1\",\"pages\":\"vbaf178\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-07-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12373637/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bioinformatics advances\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1093/bioadv/vbaf178\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioinformatics advances","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1093/bioadv/vbaf178","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
Gene-set enrichment analysis and visualization on the web using EnrichmentMap:RNASeq.
Summary: EnrichmentMap: RNASeq (enrichmentmap.org) is an intuitive, web-based app for gene-set enrichment analysis and visualization, specifically supporting two-case RNA-Seq experiments for Homo sapiens. The web app introduces a simplified user interface, faster processing times, and eliminates the need for software installation compared to running similar workflows in the Cytoscape desktop software, catering to biologists with minimal computational experience. EnrichmentMap: RNASeq is a new type of Cytoscape web app that is interoperable with Cytoscape.
Availability and implementation: The app is available to use at enrichmentmap.org and the source code is available at github.com/cytoscape/enrichment-map-webapp.
求助内容：
应助结果提醒方式：
京公网安备 11010802042870号
