Duangjai Todsaporn, Kamonpan Sanachai, Chanat Aonbangkhen, Athina Geronikaki, Victor Kartsev, Boris Lichitsky, Andrey Komogortsev, Phornphimon Maitarad, Thanyada Rungrotmongkol
{"title":"探索新型呋喃水仙碱衍生物作为HeLa细胞中有希望的JAK2抑制剂:整合对接,QSAR-ML, MD模拟和实验。","authors":"Duangjai Todsaporn, Kamonpan Sanachai, Chanat Aonbangkhen, Athina Geronikaki, Victor Kartsev, Boris Lichitsky, Andrey Komogortsev, Phornphimon Maitarad, Thanyada Rungrotmongkol","doi":"10.1016/j.csbj.2025.08.007","DOIUrl":null,"url":null,"abstract":"<p><p>Cervical cancer, largely driven by high-risk human papillomavirus (HPV), remains a global health challenge. Janus tyrosine kinase 2 (JAK2) has emerged as a promising therapeutic target for HPV-induced malignancies. This study employed both <i>in silico</i> and <i>in vitro</i> approaches to discover novel JAK2 inhibitors from a library of 76 furochochicine (FCC) derivatives. Twenty-nine compounds were selected via virtual screening, synthesized, and tested for cytotoxicity against HeLa cells. Four FCCs showed potent cytotoxicity with selectivity indices (SI) greater than 3. These cytotoxicity data were used to construct QSAR models with machine learning; eXtreme Gradient Boosting (XGB) yielded the best performance (RMSE = 0.177, R² = 0.831, MAPE = 2.93 %) and was used to predict additional FCC derivatives. FCC90 emerged as a lead compound with strong predictive accuracy (MAPE = 1.43 %) and selectivity (SI = 3.25). JAK2 kinase assays revealed strong inhibition by FCC6, FCC27, and FCC90 (IC₅₀ = 9.10-27.34 nM), with FCC6 and FCC27 surpassing ruxolitinib. Flow cytometry confirmed apoptosis and sub-G1 cell cycle arrest. Molecular dynamics simulations supported the stability of FCC-JAK2 complexes. Furthermore, all active compounds met extended Rule of Five (eRo5) criteria. These findings highlight the potential of FCC derivatives as JAK2 inhibitors for cervical cancer therapy.</p>","PeriodicalId":10715,"journal":{"name":"Computational and structural biotechnology journal","volume":"27 ","pages":"3625-3639"},"PeriodicalIF":4.1000,"publicationDate":"2025-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12395164/pdf/","citationCount":"0","resultStr":"{\"title\":\"Exploring novel furochochicine derivatives as promising JAK2 inhibitors in HeLa cells: Integrating docking, QSAR-ML, MD simulations, and experiments.\",\"authors\":\"Duangjai Todsaporn, Kamonpan Sanachai, Chanat Aonbangkhen, Athina Geronikaki, Victor Kartsev, Boris Lichitsky, Andrey Komogortsev, Phornphimon Maitarad, Thanyada Rungrotmongkol\",\"doi\":\"10.1016/j.csbj.2025.08.007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Cervical cancer, largely driven by high-risk human papillomavirus (HPV), remains a global health challenge. Janus tyrosine kinase 2 (JAK2) has emerged as a promising therapeutic target for HPV-induced malignancies. This study employed both <i>in silico</i> and <i>in vitro</i> approaches to discover novel JAK2 inhibitors from a library of 76 furochochicine (FCC) derivatives. Twenty-nine compounds were selected via virtual screening, synthesized, and tested for cytotoxicity against HeLa cells. Four FCCs showed potent cytotoxicity with selectivity indices (SI) greater than 3. These cytotoxicity data were used to construct QSAR models with machine learning; eXtreme Gradient Boosting (XGB) yielded the best performance (RMSE = 0.177, R² = 0.831, MAPE = 2.93 %) and was used to predict additional FCC derivatives. FCC90 emerged as a lead compound with strong predictive accuracy (MAPE = 1.43 %) and selectivity (SI = 3.25). JAK2 kinase assays revealed strong inhibition by FCC6, FCC27, and FCC90 (IC₅₀ = 9.10-27.34 nM), with FCC6 and FCC27 surpassing ruxolitinib. Flow cytometry confirmed apoptosis and sub-G1 cell cycle arrest. Molecular dynamics simulations supported the stability of FCC-JAK2 complexes. Furthermore, all active compounds met extended Rule of Five (eRo5) criteria. These findings highlight the potential of FCC derivatives as JAK2 inhibitors for cervical cancer therapy.</p>\",\"PeriodicalId\":10715,\"journal\":{\"name\":\"Computational and structural biotechnology journal\",\"volume\":\"27 \",\"pages\":\"3625-3639\"},\"PeriodicalIF\":4.1000,\"publicationDate\":\"2025-08-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12395164/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and structural biotechnology journal\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1016/j.csbj.2025.08.007\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and structural biotechnology journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.csbj.2025.08.007","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Exploring novel furochochicine derivatives as promising JAK2 inhibitors in HeLa cells: Integrating docking, QSAR-ML, MD simulations, and experiments.
Cervical cancer, largely driven by high-risk human papillomavirus (HPV), remains a global health challenge. Janus tyrosine kinase 2 (JAK2) has emerged as a promising therapeutic target for HPV-induced malignancies. This study employed both in silico and in vitro approaches to discover novel JAK2 inhibitors from a library of 76 furochochicine (FCC) derivatives. Twenty-nine compounds were selected via virtual screening, synthesized, and tested for cytotoxicity against HeLa cells. Four FCCs showed potent cytotoxicity with selectivity indices (SI) greater than 3. These cytotoxicity data were used to construct QSAR models with machine learning; eXtreme Gradient Boosting (XGB) yielded the best performance (RMSE = 0.177, R² = 0.831, MAPE = 2.93 %) and was used to predict additional FCC derivatives. FCC90 emerged as a lead compound with strong predictive accuracy (MAPE = 1.43 %) and selectivity (SI = 3.25). JAK2 kinase assays revealed strong inhibition by FCC6, FCC27, and FCC90 (IC₅₀ = 9.10-27.34 nM), with FCC6 and FCC27 surpassing ruxolitinib. Flow cytometry confirmed apoptosis and sub-G1 cell cycle arrest. Molecular dynamics simulations supported the stability of FCC-JAK2 complexes. Furthermore, all active compounds met extended Rule of Five (eRo5) criteria. These findings highlight the potential of FCC derivatives as JAK2 inhibitors for cervical cancer therapy.
期刊介绍:
Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to:
Structure and function of proteins, nucleic acids and other macromolecules
Structure and function of multi-component complexes
Protein folding, processing and degradation
Enzymology
Computational and structural studies of plant systems
Microbial Informatics
Genomics
Proteomics
Metabolomics
Algorithms and Hypothesis in Bioinformatics
Mathematical and Theoretical Biology
Computational Chemistry and Drug Discovery
Microscopy and Molecular Imaging
Nanotechnology
Systems and Synthetic Biology