N-(呋喃-3-基)苯甲酰胺和N-(噻吩-3-基)苯甲酰胺结晶差异的能量研究。

IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY
Wayne H Pearson, Joseph J Urban, Amy H Roy MacArthur, Shirley Lin, Megan Mohadjer Beromi
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引用次数: 0

摘要

用单晶x射线衍射法在173 K下测定了N-(呋喃-3-基)苯酰胺C11H9NO2 (FAP)和N-(噻吩-3-基)苯酰胺C11H9NO2 (TAP)的晶体结构。这两种结构的分子单元由三个平面区域组成:一个五元芳基环、一个酰胺键和一个苯基环。这两种化合物都在P1空间群中结晶,在单元胞中没有溶剂。在不对称的FAP单元中,有两个晶体学上独特,但几何上相似的分子。- h……FAP中的O氢键将分子连接成沿b轴的线性链。TAP中的不对称单元是一种无序分子,包含两个具有不同取向的噻吩环构象。- h……TAP中的氢键将分子连接成沿a轴的线性链。采用密度泛函理论(DFT)在M06-2X/6-31+G(d)水平上预测了气相分离构象的构象。FAP中的构象相对于它们计算的孤立构象具有相似的扭角。然而,DFT计算显示,相对于预测的气相构象,TAP中噻吩环-酰胺平面的扭转角存在显著差异(bbb20°)。两种晶体结构中氢键分子之间的π堆积环相互作用并不相同,这与FAP和TAP环境中色散和静电相互作用幅度的差异有关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An energetic study of differences in crystallization of N-(furan-3-yl)benzamide and N-(thiophen-3-yl)benzamide.

The crystal structures of N-(furan-3-yl)benzamide, C11H9NOS, FAP, and N-(thiophen-3-yl)benzamide, C11H9NO2, TAP, were determined by single-crystal X-ray diffraction at 173 K. The molecular units in both structures consist of three planar regions: a five-membered aryl ring, an amide linkage, and a phenyl ring. Both compounds crystallize in the space group P1 with no solvent in the unit cell. There are two crystallographically unique, but geometrically similar, molecules in the asymmetric unit of FAP. N-H...O hydrogen bonds in FAP link the molecules into a linear chain lying along the b axis. The asymmetric unit in TAP is a disordered molecule containing contributions from two conformers with different orientations of the thiophenyl ring. N-H...O hydrogen bonds in TAP link the molecules into a linear chain lying along the a axis. Conformations of the gas-phase isolated conformers were predicted with density functional theory (DFT) calculations at the M06-2X/6-31+G(d) level. The conformers in FAP possess similar twist angles with respect to their calculated isolated conformers. However, the DFT calculations revealed a significant difference (>20°) in the twist angles of the thiophenyl rings-amide plane in TAP relative to the predicted gas-phase conformations. The π-stacking ring interactions between hydrogen-bonded molecules in the two crystal structures are not the same and are related to the difference in the magnitude of the dispersion and electrostatic interactions in the FAP and TAP environments..

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来源期刊
Acta Crystallographica Section C Structural Chemistry
Acta Crystallographica Section C Structural Chemistry CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
1.60
自引率
12.50%
发文量
148
期刊介绍: Acta Crystallographica Section C: Structural Chemistry is continuing its transition to a journal that publishes exciting science with structural content, in particular, important results relating to the chemical sciences. Section C is the journal of choice for the rapid publication of articles that highlight interesting research facilitated by the determination, calculation or analysis of structures of any type, other than macromolecular structures. Articles that emphasize the science and the outcomes that were enabled by the study are particularly welcomed. Authors are encouraged to include mainstream science in their papers, thereby producing manuscripts that are substantial scientific well-rounded contributions that appeal to a broad community of readers and increase the profile of the authors.
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