{"title":"水平基因转移对极端环境适应的影响。","authors":"Olga Zhaxybayeva, Camilla L Nesbø","doi":"10.1016/j.jmb.2025.169403","DOIUrl":null,"url":null,"abstract":"<p><p>Horizontal (or lateral) gene transfer - an acquisition of genetic material not associated with the organismal reproduction - is known to alter genomes of most, if not all, living organisms. There is mounting evidence for the importance of gene exchange in organismal adaptations to new or changing environmental conditions. In comparison to accumulation of de novo mutations, acquisition of a gene already beneficial in the environment is fast and less costly, and thus an advantageous, way to adjust to survival and growth in new conditions. Adaptation to extreme environments at the boundaries of habitat conditions beyond which cellular integrity, metabolism and growth are not possible, is not an exception. Here we review the impact of horizontal gene transfer on organismal adaptations to natural and human-made extreme environments. This includes thermophiles living at high temperatures, psychrophiles found at low temperatures, acidophiles inhabiting high acidity environments, alkaliphiles thriving at high pH, halophiles found in high salt environments, xerophiles that can tolerate extremely low water availability, oligotrophes thriving at low nutrient availability, piezophiles inhabiting high pressure environments, and organisms that can withstand high levels of ionizing radiation. We also discuss the challenges and future directions for deciphering genetic determinants and horizontal gene transfer events of extremophiles' adaptations.</p>","PeriodicalId":369,"journal":{"name":"Journal of Molecular Biology","volume":" ","pages":"169403"},"PeriodicalIF":4.5000,"publicationDate":"2025-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Impact of Horizontal Gene Transfer on Adaptations to Extreme Environments.\",\"authors\":\"Olga Zhaxybayeva, Camilla L Nesbø\",\"doi\":\"10.1016/j.jmb.2025.169403\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Horizontal (or lateral) gene transfer - an acquisition of genetic material not associated with the organismal reproduction - is known to alter genomes of most, if not all, living organisms. There is mounting evidence for the importance of gene exchange in organismal adaptations to new or changing environmental conditions. In comparison to accumulation of de novo mutations, acquisition of a gene already beneficial in the environment is fast and less costly, and thus an advantageous, way to adjust to survival and growth in new conditions. Adaptation to extreme environments at the boundaries of habitat conditions beyond which cellular integrity, metabolism and growth are not possible, is not an exception. Here we review the impact of horizontal gene transfer on organismal adaptations to natural and human-made extreme environments. This includes thermophiles living at high temperatures, psychrophiles found at low temperatures, acidophiles inhabiting high acidity environments, alkaliphiles thriving at high pH, halophiles found in high salt environments, xerophiles that can tolerate extremely low water availability, oligotrophes thriving at low nutrient availability, piezophiles inhabiting high pressure environments, and organisms that can withstand high levels of ionizing radiation. We also discuss the challenges and future directions for deciphering genetic determinants and horizontal gene transfer events of extremophiles' adaptations.</p>\",\"PeriodicalId\":369,\"journal\":{\"name\":\"Journal of Molecular Biology\",\"volume\":\" \",\"pages\":\"169403\"},\"PeriodicalIF\":4.5000,\"publicationDate\":\"2025-08-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1016/j.jmb.2025.169403\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.jmb.2025.169403","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Impact of Horizontal Gene Transfer on Adaptations to Extreme Environments.
Horizontal (or lateral) gene transfer - an acquisition of genetic material not associated with the organismal reproduction - is known to alter genomes of most, if not all, living organisms. There is mounting evidence for the importance of gene exchange in organismal adaptations to new or changing environmental conditions. In comparison to accumulation of de novo mutations, acquisition of a gene already beneficial in the environment is fast and less costly, and thus an advantageous, way to adjust to survival and growth in new conditions. Adaptation to extreme environments at the boundaries of habitat conditions beyond which cellular integrity, metabolism and growth are not possible, is not an exception. Here we review the impact of horizontal gene transfer on organismal adaptations to natural and human-made extreme environments. This includes thermophiles living at high temperatures, psychrophiles found at low temperatures, acidophiles inhabiting high acidity environments, alkaliphiles thriving at high pH, halophiles found in high salt environments, xerophiles that can tolerate extremely low water availability, oligotrophes thriving at low nutrient availability, piezophiles inhabiting high pressure environments, and organisms that can withstand high levels of ionizing radiation. We also discuss the challenges and future directions for deciphering genetic determinants and horizontal gene transfer events of extremophiles' adaptations.
期刊介绍:
Journal of Molecular Biology (JMB) provides high quality, comprehensive and broad coverage in all areas of molecular biology. The journal publishes original scientific research papers that provide mechanistic and functional insights and report a significant advance to the field. The journal encourages the submission of multidisciplinary studies that use complementary experimental and computational approaches to address challenging biological questions.
Research areas include but are not limited to: Biomolecular interactions, signaling networks, systems biology; Cell cycle, cell growth, cell differentiation; Cell death, autophagy; Cell signaling and regulation; Chemical biology; Computational biology, in combination with experimental studies; DNA replication, repair, and recombination; Development, regenerative biology, mechanistic and functional studies of stem cells; Epigenetics, chromatin structure and function; Gene expression; Membrane processes, cell surface proteins and cell-cell interactions; Methodological advances, both experimental and theoretical, including databases; Microbiology, virology, and interactions with the host or environment; Microbiota mechanistic and functional studies; Nuclear organization; Post-translational modifications, proteomics; Processing and function of biologically important macromolecules and complexes; Molecular basis of disease; RNA processing, structure and functions of non-coding RNAs, transcription; Sorting, spatiotemporal organization, trafficking; Structural biology; Synthetic biology; Translation, protein folding, chaperones, protein degradation and quality control.