针对Hsp27抑制胶质母细胞瘤:一项全面的计算机研究

IF 3 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
Emmanuel Amarachi Iwuchukwu, Ikechukwu Achilonu
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引用次数: 0

摘要

胶质母细胞瘤(GBM)过度表达热休克蛋白27 (HSP27),从而增强雄激素受体(AR)的转录活性。抑制HSP27可以阻断AR信号传导,为GBM提供了潜在的治疗方法。结构动力学的计算机分析表明,铅优化后的COMP2和COMP3与COMP1、阳性对照和阴性对照相比,活性有所增强。重新对接的配体排列证实了对接的准确性,而结构分析表明,化合物结合破坏了Hsp27的3D结构,提示抑制作用。对配体结合氨基酸行为的批判性观察表明,相对于载脂蛋白有轻微的刚性,因此表明失活。反复观察表明,Arg140、Arg136和His103对于第一个口袋的结合稳定至关重要,而当COMP2迁移到第二个口袋时,Thr143对于结合稳定似乎更为突出。COMP1和COMP3的Gbind分别为- 31.59±6.34 kcal/mol和- 33.61±4.09 kcal/mol,而comp21和comp2的Gbind分别为- 21.96±8.16 kcal/mol和- 18.36±5.76 kcal/mol,阳性对照为- 19.60±4.74,阴性对照为- 8.45±3.23;第二口袋中COMP2的能量值降低可能是由于共享口袋结合。本研究表明,COMP2具有双重结合作用,阳性对照和阴性对照结果表明,所测化合物可能是HSP27抑制剂。基于药代动力学和理化评价,这些化合物有望成为药物样候选物。这些发现支持开发新的HSP27抑制剂来有效阻断GLM。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Targeting Hsp27 inhibition in Glioblastoma: A comprehensive in silico investigation

Targeting Hsp27 inhibition in Glioblastoma: A comprehensive in silico investigation
Glioblastoma (GBM) overexpresses heat shock protein 27 (HSP27), which enhances androgen receptor (AR) transcriptional activity. Inhibiting HSP27 can block AR signaling, offering a potential therapeutic approach for GBM. Computer analysis of structural dynamics showed that lead-optimized COMP2 and COMP3 had enhanced activity compared to COMP1, the positive control and the negative control. The re-docked ligand alignment confirms docking accuracy, while structural analysis shows that compound binding disrupts Hsp27's 3D structure, suggesting inhibition. A critical look at the ligand-bound amino acid behavior suggests slight rigidity relative to the apo, thus suggesting inactivation. Recurring observations suggest that Arg140, Arg136 and His103 are crucial for binding stabilization in the first pocket, whereas when COMP2 migrates to the second pocket, Thr143 appears to be more prominent for binding stabilization. An estimated Gbind of −31.59 ± 6.34 kcal/mol and −33.61 ± 4.09 kcal/mol was obtained for COMP1 and COMP3, respectively, whereas COMP21st and COMP2nd exhibited a Gbind of −21.96 ± 8.16 kcal/mol and −18.36 ± 5.76 kcal/mol, the positive control is −19.60 ± 4.74 and the negative control −8.45 ± 3.23; the reduction in the energy value of COMP2 in the second pocket could be due to shared pocket binding. The study suggests that COMP2 acts as a dual binder, and results from positive and negative controls indicate that the tested compounds could be HSP27 inhibitors. These compounds show promise as drug-like candidates based on pharmacokinetic and physicochemical evaluations. The findings support the development of novel HSP27 inhibitors to effectively block GLM.
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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