Yang Yang , Meiqin Xu , Ke Wang , Liang Xia , Qianchen Ning , Xintong Wu , Xinyue Zang , Fangfang Lai , Xiaoguang Chen , Zhiqiang Feng
{"title":"溴苯苯醚衍生物YPD-29B的发现:一种新的临床前化合物,靶向程序性细胞死亡-1/程序性细胞死亡-配体1 (PD-1/PD-L1)相互作用","authors":"Yang Yang , Meiqin Xu , Ke Wang , Liang Xia , Qianchen Ning , Xintong Wu , Xinyue Zang , Fangfang Lai , Xiaoguang Chen , Zhiqiang Feng","doi":"10.1016/j.bmc.2025.118366","DOIUrl":null,"url":null,"abstract":"<div><div>Targeting the PD-1/PD-L1 immune checkpoint pathway with small molecules has exhibited great promise. Herein, to develop the inhibitors with good activity, pharmacokinetic properties and druggability, a novel series of halogens substituted derivatives at the 2-position of the biphenyl group were synthesized, screened, and their inhibitory activity against the PD-1/PD-L1 protein-protein interaction (PPI) was evaluated through a HTRF assay. Among them, <strong>YPD-29B</strong> exhibited potent activity with IC<sub>50</sub> value of less than 1 pM. Furthermore, the PBMC-based PD-1/PD-L1 blockade bioassay revealed that <strong>YPD-29B</strong> could inhibit the PD-1/PD-L1 interaction and restore T-cell function with the concentration of 10 nM at the cellular level and with the IC<sub>50</sub> value of 0.18 nM. However, the poor solubility of <strong>YPD-29B</strong> limited the evaluation of antitumor activity <em>in vivo</em>. Thus, the prodrug, sodium salt and hydrochloride of <strong>YPD-29B</strong> were designed and synthesized to conduct the animal experiments, revealing the obvious anti-melanoma activity of <strong>YPD-29B-Na</strong> with TGI of 64.11 % and weak toxicity on the blood index and the body weight compared with the positive control CTX. T lymphocyte infiltration markedly increased in tumors of the different treated groups, suggesting the activation of the immune system. Besides, molecular docking verified the rationality of the design. <strong>IMMH-010</strong>, as a prodrug of <strong>YPD-29B</strong> has been approved for clinical phase I by NMPA. We hope these above results could offer a novel perspective for the development of PD-1/PD-L1 small molecule inhibitors.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"130 ","pages":"Article 118366"},"PeriodicalIF":3.0000,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Discovery of bromobenzyl phenyl ether derivative YPD-29B: a novel pre-clinical compound targeting the programmed cell death-1/programmed cell death-ligand 1 (PD-1/PD-L1) interaction\",\"authors\":\"Yang Yang , Meiqin Xu , Ke Wang , Liang Xia , Qianchen Ning , Xintong Wu , Xinyue Zang , Fangfang Lai , Xiaoguang Chen , Zhiqiang Feng\",\"doi\":\"10.1016/j.bmc.2025.118366\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Targeting the PD-1/PD-L1 immune checkpoint pathway with small molecules has exhibited great promise. Herein, to develop the inhibitors with good activity, pharmacokinetic properties and druggability, a novel series of halogens substituted derivatives at the 2-position of the biphenyl group were synthesized, screened, and their inhibitory activity against the PD-1/PD-L1 protein-protein interaction (PPI) was evaluated through a HTRF assay. Among them, <strong>YPD-29B</strong> exhibited potent activity with IC<sub>50</sub> value of less than 1 pM. Furthermore, the PBMC-based PD-1/PD-L1 blockade bioassay revealed that <strong>YPD-29B</strong> could inhibit the PD-1/PD-L1 interaction and restore T-cell function with the concentration of 10 nM at the cellular level and with the IC<sub>50</sub> value of 0.18 nM. However, the poor solubility of <strong>YPD-29B</strong> limited the evaluation of antitumor activity <em>in vivo</em>. Thus, the prodrug, sodium salt and hydrochloride of <strong>YPD-29B</strong> were designed and synthesized to conduct the animal experiments, revealing the obvious anti-melanoma activity of <strong>YPD-29B-Na</strong> with TGI of 64.11 % and weak toxicity on the blood index and the body weight compared with the positive control CTX. T lymphocyte infiltration markedly increased in tumors of the different treated groups, suggesting the activation of the immune system. Besides, molecular docking verified the rationality of the design. <strong>IMMH-010</strong>, as a prodrug of <strong>YPD-29B</strong> has been approved for clinical phase I by NMPA. We hope these above results could offer a novel perspective for the development of PD-1/PD-L1 small molecule inhibitors.</div></div>\",\"PeriodicalId\":255,\"journal\":{\"name\":\"Bioorganic & Medicinal Chemistry\",\"volume\":\"130 \",\"pages\":\"Article 118366\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-08-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bioorganic & Medicinal Chemistry\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0968089625003074\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioorganic & Medicinal Chemistry","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0968089625003074","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Discovery of bromobenzyl phenyl ether derivative YPD-29B: a novel pre-clinical compound targeting the programmed cell death-1/programmed cell death-ligand 1 (PD-1/PD-L1) interaction
Targeting the PD-1/PD-L1 immune checkpoint pathway with small molecules has exhibited great promise. Herein, to develop the inhibitors with good activity, pharmacokinetic properties and druggability, a novel series of halogens substituted derivatives at the 2-position of the biphenyl group were synthesized, screened, and their inhibitory activity against the PD-1/PD-L1 protein-protein interaction (PPI) was evaluated through a HTRF assay. Among them, YPD-29B exhibited potent activity with IC50 value of less than 1 pM. Furthermore, the PBMC-based PD-1/PD-L1 blockade bioassay revealed that YPD-29B could inhibit the PD-1/PD-L1 interaction and restore T-cell function with the concentration of 10 nM at the cellular level and with the IC50 value of 0.18 nM. However, the poor solubility of YPD-29B limited the evaluation of antitumor activity in vivo. Thus, the prodrug, sodium salt and hydrochloride of YPD-29B were designed and synthesized to conduct the animal experiments, revealing the obvious anti-melanoma activity of YPD-29B-Na with TGI of 64.11 % and weak toxicity on the blood index and the body weight compared with the positive control CTX. T lymphocyte infiltration markedly increased in tumors of the different treated groups, suggesting the activation of the immune system. Besides, molecular docking verified the rationality of the design. IMMH-010, as a prodrug of YPD-29B has been approved for clinical phase I by NMPA. We hope these above results could offer a novel perspective for the development of PD-1/PD-L1 small molecule inhibitors.
期刊介绍:
Bioorganic & Medicinal Chemistry provides an international forum for the publication of full original research papers and critical reviews on molecular interactions in key biological targets such as receptors, channels, enzymes, nucleotides, lipids and saccharides.
The aim of the journal is to promote a better understanding at the molecular level of life processes, and living organisms, as well as the interaction of these with chemical agents. A special feature will be that colour illustrations will be reproduced at no charge to the author, provided that the Editor agrees that colour is essential to the information content of the illustration in question.