E. Tyler Carr, Gregory Janesch, Nathaniel Charest, Michael Zurek-Ost, Katherine Phillips, Kristin Isaacs and Antony J. Williams*,
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Curating and Visualizing the Analytical Methods and the Open Spectral Database’s Chemical Functional Use Taxonomy
Herein, we report on the development of a new Chemical Function Taxonomy (ChemFuncT), categorizing functional uses for over 21,000 chemicals that were programmatically aggregated from four publicly available sources. Thousands of sourced chemical categories were harmonized into a hierarchical taxonomy comprising approximately 300 classifications. The taxonomy was developed specifically to allow for annotation of documents hosted in EPA’s Analytical Methods and Open Spectra (AMOS) database and web application. An interactive visualization integrated into the AMOS web interface facilitates user identification of both analytical methods and chemical fact sheets corresponding to chemical functional uses. Beyond analytical method discovery, ChemFuncT supports chemical exposure modeling and product safety assessment by providing structured classification data and streamlined identification of chemical functional roles.
期刊介绍:
The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery.
Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field.
As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.