金银花木犀草素抑菌作用的蛋白网络相互作用。

IF 3.9 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Frontiers in bioinformatics Pub Date : 2025-08-01 eCollection Date: 2025-01-01 DOI:10.3389/fbinf.2025.1637479
Jianfeng Zhang, Mujun Chen, Dianzeng Yang, Yanjie Jia
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引用次数: 0

摘要

从分子水平对木犀草素抑菌机理进行了全面分析。首先从STITCH数据库中检索木黄素相关靶点,然后从STRING数据库中获取蛋白-蛋白相互作用(PPI)信息。随后将检索到的PPI数据导入Cytoscape软件以构建PPI网络。最后,利用分子复杂度检测(MCODE)算法和BinGo插件分别对构建的网络进行模块分析和功能标注。结果表明,共从数据库中成功筛选出10个目标。基于这些目标,构建了一个由91个节点和332条边组成的PPI网络。聚类分析鉴定出7个不同的功能模块,随后的模块分析进一步证明木犀草素主要参与多种生物过程,包括病原菌耐药性、抗菌防御反应、病原菌耐药性以及对革兰氏阴性菌和革兰氏阳性菌的抗性。这些发现表明木犀草素具有很强的抗菌和抗真菌活性。通过在分子网络水平上研究木犀草素的抑制机制,为开发新的抑菌策略铺平了道路,为相关研究提供了有价值的视角。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The bacteriostatic regulation of luteolin from honeysuckle by protein network interaction.

A comprehensive analysis of the bacteriostatic mechanism of luteolin at the molecular level was performed. Luteolin-related targets were first retrieved from the STITCH database, followed by the acquisition of protein-protein interaction (PPI) information from the STRING database. The retrieved PPI data was subsequently imported into Cytoscape software to construct a PPI network. Finally, the Molecular Complexity Detection (MCODE) algorithm and BinGo plugin were utilized to conduct module analysis and functional annotation of the constructed network, respectively. The results showed that a total of ten targets were successfully screened from the database. Based on these targets, a PPI network consisting of 91 nodes and 332 edges was constructed. Cluster analysis identified seven distinct functional modules, and subsequent module analysis further demonstrated that luteolin was primarily involved in multiple biological processes, including pathogenic bacteria resistance, antibacterial defensive responses, pathogenic fungi resistance, and resistance to both gram-negative and gram-positive bacteria. These findings indicated that luteolin exhibits robust antibacterial and antifungal activities. By investigating the inhibitory mechanism of luteolin at the molecular-network level, this study paves the way for the development of novel bacteriostatic strategies, offering a valuable perspective for related research.

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