Aravind Senthil Vel, Julian Spils, Daniel Cortés-Borda and François-Xavier Felpin
{"title":"贝叶斯优化中的自适应边界约束:复杂反应优化中防止无效实验的一般策略","authors":"Aravind Senthil Vel, Julian Spils, Daniel Cortés-Borda and François-Xavier Felpin","doi":"10.1039/D5RE00161G","DOIUrl":null,"url":null,"abstract":"<p >Efficiently identifying optimal reaction conditions with minimal experimental effort is a fundamental challenge in chemical research, given the high cost and time involved in performing experiments. Recently, Bayesian Optimization (BO) has gained popularity for this purpose. However, we identify that for some common objective functions (<em>e.g.</em>, throughput), some experimental conditions suggested by the algorithm are futile to perform. These experiments can be identified by determining whether the given experimental conditions can improve the existing best objective, even when assuming a 100% yield. We propose a strategy that incorporates knowledge of the objective function into BO, termed Adaptive Boundary Constraint Bayesian optimization (ABC-BO). The proposed algorithm was tested in three <em>in silico</em> experiments using two different optimization solvers with various acquisition functions. ABC-BO effectively avoided futile experiments, increasing the likelihood of finding the best objective value. The effectiveness of ABC-BO was further demonstrated in an experimental case study of real-world complex reaction optimization involving multiple categorical, continuous, and discrete numeric variables. In the optimization performed using standard BO, 50% of the experiments were futile. In contrast, ABC-BO avoided futile experiments and identified a superior objective value compared to BO in a relatively smaller number of experiments. We show that the number of promising experimental conditions in the overall search space reduces as the optimization process progresses. Identifying and focusing on these conditions is more beneficial for optimizing the complex reaction space, especially when working with a limited experimental budget.</p>","PeriodicalId":101,"journal":{"name":"Reaction Chemistry & Engineering","volume":" 9","pages":" 2137-2147"},"PeriodicalIF":3.1000,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Adaptive boundary constraint in Bayesian optimization: a general strategy to prevent futile experiments in complex reaction optimization†\",\"authors\":\"Aravind Senthil Vel, Julian Spils, Daniel Cortés-Borda and François-Xavier Felpin\",\"doi\":\"10.1039/D5RE00161G\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Efficiently identifying optimal reaction conditions with minimal experimental effort is a fundamental challenge in chemical research, given the high cost and time involved in performing experiments. Recently, Bayesian Optimization (BO) has gained popularity for this purpose. However, we identify that for some common objective functions (<em>e.g.</em>, throughput), some experimental conditions suggested by the algorithm are futile to perform. These experiments can be identified by determining whether the given experimental conditions can improve the existing best objective, even when assuming a 100% yield. We propose a strategy that incorporates knowledge of the objective function into BO, termed Adaptive Boundary Constraint Bayesian optimization (ABC-BO). The proposed algorithm was tested in three <em>in silico</em> experiments using two different optimization solvers with various acquisition functions. ABC-BO effectively avoided futile experiments, increasing the likelihood of finding the best objective value. The effectiveness of ABC-BO was further demonstrated in an experimental case study of real-world complex reaction optimization involving multiple categorical, continuous, and discrete numeric variables. In the optimization performed using standard BO, 50% of the experiments were futile. In contrast, ABC-BO avoided futile experiments and identified a superior objective value compared to BO in a relatively smaller number of experiments. We show that the number of promising experimental conditions in the overall search space reduces as the optimization process progresses. Identifying and focusing on these conditions is more beneficial for optimizing the complex reaction space, especially when working with a limited experimental budget.</p>\",\"PeriodicalId\":101,\"journal\":{\"name\":\"Reaction Chemistry & Engineering\",\"volume\":\" 9\",\"pages\":\" 2137-2147\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-06-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Reaction Chemistry & Engineering\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2025/re/d5re00161g\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Reaction Chemistry & Engineering","FirstCategoryId":"92","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2025/re/d5re00161g","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Adaptive boundary constraint in Bayesian optimization: a general strategy to prevent futile experiments in complex reaction optimization†
Efficiently identifying optimal reaction conditions with minimal experimental effort is a fundamental challenge in chemical research, given the high cost and time involved in performing experiments. Recently, Bayesian Optimization (BO) has gained popularity for this purpose. However, we identify that for some common objective functions (e.g., throughput), some experimental conditions suggested by the algorithm are futile to perform. These experiments can be identified by determining whether the given experimental conditions can improve the existing best objective, even when assuming a 100% yield. We propose a strategy that incorporates knowledge of the objective function into BO, termed Adaptive Boundary Constraint Bayesian optimization (ABC-BO). The proposed algorithm was tested in three in silico experiments using two different optimization solvers with various acquisition functions. ABC-BO effectively avoided futile experiments, increasing the likelihood of finding the best objective value. The effectiveness of ABC-BO was further demonstrated in an experimental case study of real-world complex reaction optimization involving multiple categorical, continuous, and discrete numeric variables. In the optimization performed using standard BO, 50% of the experiments were futile. In contrast, ABC-BO avoided futile experiments and identified a superior objective value compared to BO in a relatively smaller number of experiments. We show that the number of promising experimental conditions in the overall search space reduces as the optimization process progresses. Identifying and focusing on these conditions is more beneficial for optimizing the complex reaction space, especially when working with a limited experimental budget.
期刊介绍:
Reaction Chemistry & Engineering is a new journal reporting cutting edge research into all aspects of making molecules for the benefit of fundamental research, applied processes and wider society.
From fundamental, molecular-level chemistry to large scale chemical production, Reaction Chemistry & Engineering brings together communities of chemists and chemical engineers working to ensure the crucial role of reaction chemistry in today’s world.