基于炎症和脂质代谢基因的子宫内膜癌新预后模型。

IF 1 4区 生物学 Q4 GENETICS & HEREDITY
Genetic testing and molecular biomarkers Pub Date : 2025-08-01 Epub Date: 2025-08-14 DOI:10.1177/19450265251366431
Linyan Zhu, Haiyan Zhu, Zhao Zhang, Fei Xu, Yong Zhu, Keshuo Ding
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引用次数: 0

摘要

背景:子宫内膜癌(EC)是一种发生在子宫内上皮的恶性肿瘤,在世界范围内的发病率和死亡率都在不断上升。炎症和脂质代谢会增加患EC的风险。材料与方法:基于TCGA-UCEC数据库对EC和正常样本中的差异表达基因(Differential expression genes, DEGs)进行分析,筛选出与炎症和脂质代谢相关的DEGs作为候选基因。采用Cox回归和LASSO回归分析预后相关基因,建立预后模型。采用受试者工作特征曲线和Kaplan-Meier生存分析来评估预后模型的预测性能。进行基因集富集分析、免疫浸润分析和基因集变异分析。采用逆转录定量PCR (RT-qPCR)和免疫组织化学检测局部组织中预后基因的表达。采用甲基噻唑基二苯四唑溴化试验、迁移试验和伤口愈合试验研究CKMT1B对EC细胞系细胞增殖和迁移的作用。结果:基于CKMT1B、NTS、NSG2、H3C1、MAL、ELOA2 6个预后相关基因在EC中建立了预后模型,该模型具有良好的预测效果。不同途径和免疫细胞浸润与预后基因相关。与正常组织相比,5/6预后基因在局部EC组织中高表达。敲低CKMT1B可显著抑制EC细胞株的细胞增殖和转移。结论:CKMT1B、NTS、NSG2、H3C1、MAL、ELOA2(尤其是CKMT1B)是影响人EC的重要因素,可用于EC的危险分层和预后预测。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Novel Prognostic Model of Endometrial Cancer Based on Inflammation and Lipid Metabolism Genes.

Background: Endometrial cancer (EC) is a malignancy of the inner epithelial lining of the uterus, with an increasing incidence and disease-associated mortality worldwide. Inflammation and lipid metabolism contribute to EC risk. Materials and Methods: Differential expression genes (DEGs) in EC and normal samples were analyzed based on the TCGA-UCEC database, and DEGs associated with inflammation and lipid metabolism were screened out to be candidate genes. Prognosis-related genes were analyzed using Cox regression and LASSO regression, and a prognostic model was established. Receiver operating characteristic curves and Kaplan-Meier survival analysis were performed to assess the predictive performance of the prognostic model. Gene Set enrichment analysis, immune infiltration analysis, and gene set variation analysis were performed. Expression of prognostic genes in local tissues was examined by Reverse Transcription Quantitative PCR (RT-qPCR) and immunohistochemistry. Methylthiazolyldiphenyl-tetrazolium bromide assay, migration assay, and wound-healing assay were applied to examine the role of CKMT1B on cell proliferation and migration in EC cell lines. Results: A prognostic model based on six prognosis-related genes (CKMT1B, NTS, NSG2, H3C1, MAL, ELOA2) was established in EC, and this model had a favorable predictive performance. Respective different pathways and immune cell infiltration were associated with prognostic genes. 5/6 prognostic genes were highly expressed in local EC tissues compared with normal tissues. Knockdown of CKMT1B significantly suppressed cell proliferation and metastasis in EC cell lines. Conclusion: CKMT1B, NTS, NSG2, H3C1, MAL, and ELOA2 (especially CKMT1B) were important factors in human EC and could be potentially used for risk stratification and prognosis prediction in EC.

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来源期刊
CiteScore
2.50
自引率
7.10%
发文量
63
审稿时长
1 months
期刊介绍: Genetic Testing and Molecular Biomarkers is the leading peer-reviewed journal covering all aspects of human genetic testing including molecular biomarkers. The Journal provides a forum for the development of new technology; the application of testing to decision making in an increasingly varied set of clinical situations; ethical, legal, social, and economic aspects of genetic testing; and issues concerning effective genetic counseling. This is the definitive resource for researchers, clinicians, and scientists who develop, perform, and interpret genetic tests and their results. Genetic Testing and Molecular Biomarkers coverage includes: -Diagnosis across the life span- Risk assessment- Carrier detection in individuals, couples, and populations- Novel methods and new instrumentation for genetic testing- Results of molecular, biochemical, and cytogenetic testing- Genetic counseling
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