用特定同位素标记方案的魔角自旋核磁共振研究精氨酸动力学。

IF 4.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Darja I Rohden, Federico Napoli, Anna Kapitonova, Ben P Tatman, Roman J Lichtenecker, Paul Schanda
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引用次数: 0

摘要

将1H-13C或1H-15N特定引入到氘化蛋白质中,对于蛋白质结构和动力学的高分辨率溶液和魔角旋转(MAS) NMR研究具有巨大的潜力。精氨酸残基起着关键作用,例如在酶的活性位点。利用化学合成的在氘化主链中含有13C-1H2基团的精氨酸,我们在这里证明了质子检测MAS NMR方法对探测精氨酸动力学的有用性。在结晶泛素和134 kDa苹果酸脱氢酶的实验中,我们检测到广泛的运动,从至少几十毫秒的时间尺度上的刚性位点到主要进行纳秒运动的残基。自旋弛豫和偶极耦合测量可以定量确定这些动力学。我们观察了结晶泛素中残余Arg54的微秒动态,其主干已知在这个时间尺度上样品不同的β-转构象。这里提出的标记方案和实验扩展了高分辨率质子检测MAS NMR的工具包。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Arginine dynamics probed by magic-angle spinning NMR with a specific isotope-labeling scheme.

The specific introduction of 1H-13C or 1H-15N moieties into otherwise deuterated proteins holds great potential for high-resolution solution and magic-angle spinning (MAS) NMR studies of protein structure and dynamics. Arginine residues play key roles for example at active sites of enzymes. Taking advantage of a chemically synthesized Arg with a 13C-1H2 group in an otherwise deuterated backbone, we demonstrate here the usefulness of proton-detected MAS NMR approaches to probe arginine dynamics. In experiments with crystalline ubiquitin and the 134 kDa tetrameric enzyme malate dehydrogenase we detected a wide range of motions, from sites that are rigid on time scales of at least tens of milliseconds to residues undergoing predominantly nanosecond motions. Spin-relaxation and dipolar-coupling measurements enabled quantitative determination of these dynamics. We observed microsecond dynamics of residue Arg54 in crystalline ubiquitin, whose backbone is known to sample different β-turn conformations on this time scale. The labeling scheme and experiments presented here expand the toolkit for high-resolution proton-detected MAS NMR.

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来源期刊
Journal of Molecular Biology
Journal of Molecular Biology 生物-生化与分子生物学
CiteScore
11.30
自引率
1.80%
发文量
412
审稿时长
28 days
期刊介绍: Journal of Molecular Biology (JMB) provides high quality, comprehensive and broad coverage in all areas of molecular biology. The journal publishes original scientific research papers that provide mechanistic and functional insights and report a significant advance to the field. The journal encourages the submission of multidisciplinary studies that use complementary experimental and computational approaches to address challenging biological questions. Research areas include but are not limited to: Biomolecular interactions, signaling networks, systems biology; Cell cycle, cell growth, cell differentiation; Cell death, autophagy; Cell signaling and regulation; Chemical biology; Computational biology, in combination with experimental studies; DNA replication, repair, and recombination; Development, regenerative biology, mechanistic and functional studies of stem cells; Epigenetics, chromatin structure and function; Gene expression; Membrane processes, cell surface proteins and cell-cell interactions; Methodological advances, both experimental and theoretical, including databases; Microbiology, virology, and interactions with the host or environment; Microbiota mechanistic and functional studies; Nuclear organization; Post-translational modifications, proteomics; Processing and function of biologically important macromolecules and complexes; Molecular basis of disease; RNA processing, structure and functions of non-coding RNAs, transcription; Sorting, spatiotemporal organization, trafficking; Structural biology; Synthetic biology; Translation, protein folding, chaperones, protein degradation and quality control.
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