一种解决主观掩蔽差异和准确诊断甲状腺结节的新网络

IF 3.1 4区 生物学 Q2 BIOLOGY
Zhiyuan Ouyang , Simei Huang , Liuju Liang , Jianing Xu , Caifen Wei , Yi Zhang , Hancheng Jiang , Haifeng Tang , Lu Wang , Lin Wang , Xiangzhi Li , Zhenbing Liu , Ruojie Zhang , Lian Qin , Xiaobo Yang
{"title":"一种解决主观掩蔽差异和准确诊断甲状腺结节的新网络","authors":"Zhiyuan Ouyang ,&nbsp;Simei Huang ,&nbsp;Liuju Liang ,&nbsp;Jianing Xu ,&nbsp;Caifen Wei ,&nbsp;Yi Zhang ,&nbsp;Hancheng Jiang ,&nbsp;Haifeng Tang ,&nbsp;Lu Wang ,&nbsp;Lin Wang ,&nbsp;Xiangzhi Li ,&nbsp;Zhenbing Liu ,&nbsp;Ruojie Zhang ,&nbsp;Lian Qin ,&nbsp;Xiaobo Yang","doi":"10.1016/j.compbiolchem.2025.108572","DOIUrl":null,"url":null,"abstract":"<div><h3>Background:</h3><div>Over the past three decades, there has been a significant increase in the incidence of thyroid cancer. Ultrasound serves as a non-invasive tool in differentiating between benign and malignant thyroid nodules. However, its reliance on manual input can often lead to subjective bias.</div></div><div><h3>Purpose:</h3><div>This study proposes a novel network architecture committed to diminishing subjective bias led by manual masks and enhancing the accuracy of the current models. It amalgamates multi-scale features for the effective classification of thyroid nodules.</div></div><div><h3>Methods:</h3><div>The innovative model, deemed APSNet, finds inspiration from active and passive systems. It incorporates attention mechanisms to augment nodule recognition. The model underwent training on a localized ultrasound image dataset and was tested using an external datasets TDID and TN3K. The assessment of its performance involved metrics such as Dice, IoU, F1, Acc, Sen, Spe, Ppv, Npv, and AUC, followed by statistical tests including the Friedman and DeLong tests.</div></div><div><h3>Results:</h3><div>APSNet outperformed existing models across multiple metrics, achieving an Acc of 0.9259, F1 score of 0.9540, and AUC of 0.9243 on the TDID dataset, and an Acc of 0.9287, F1 score of 0.9001, sensitivity of 0.9273, and AUC of 0.9290 on the TN3K dataset. The DeLong test confirmed its superiority, indicating statistically significant improvements over other models. Ablation Study confirms the effectiveness of Dual-System design and the potention of Transformer-based backbone.</div></div><div><h3>Conclusions:</h3><div>APSNet offers a remarkable stride forward in thyroid nodule diagnosis by effectively addressing subjectivity and amplifying feature extraction capabilities. It proffers a more accurate and dependable diagnostic tool to clinicians.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108572"},"PeriodicalIF":3.1000,"publicationDate":"2025-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A novel network for resolving subjective masking differences and accurate thyroid nodule diagnosis\",\"authors\":\"Zhiyuan Ouyang ,&nbsp;Simei Huang ,&nbsp;Liuju Liang ,&nbsp;Jianing Xu ,&nbsp;Caifen Wei ,&nbsp;Yi Zhang ,&nbsp;Hancheng Jiang ,&nbsp;Haifeng Tang ,&nbsp;Lu Wang ,&nbsp;Lin Wang ,&nbsp;Xiangzhi Li ,&nbsp;Zhenbing Liu ,&nbsp;Ruojie Zhang ,&nbsp;Lian Qin ,&nbsp;Xiaobo Yang\",\"doi\":\"10.1016/j.compbiolchem.2025.108572\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Background:</h3><div>Over the past three decades, there has been a significant increase in the incidence of thyroid cancer. Ultrasound serves as a non-invasive tool in differentiating between benign and malignant thyroid nodules. However, its reliance on manual input can often lead to subjective bias.</div></div><div><h3>Purpose:</h3><div>This study proposes a novel network architecture committed to diminishing subjective bias led by manual masks and enhancing the accuracy of the current models. It amalgamates multi-scale features for the effective classification of thyroid nodules.</div></div><div><h3>Methods:</h3><div>The innovative model, deemed APSNet, finds inspiration from active and passive systems. It incorporates attention mechanisms to augment nodule recognition. The model underwent training on a localized ultrasound image dataset and was tested using an external datasets TDID and TN3K. The assessment of its performance involved metrics such as Dice, IoU, F1, Acc, Sen, Spe, Ppv, Npv, and AUC, followed by statistical tests including the Friedman and DeLong tests.</div></div><div><h3>Results:</h3><div>APSNet outperformed existing models across multiple metrics, achieving an Acc of 0.9259, F1 score of 0.9540, and AUC of 0.9243 on the TDID dataset, and an Acc of 0.9287, F1 score of 0.9001, sensitivity of 0.9273, and AUC of 0.9290 on the TN3K dataset. The DeLong test confirmed its superiority, indicating statistically significant improvements over other models. Ablation Study confirms the effectiveness of Dual-System design and the potention of Transformer-based backbone.</div></div><div><h3>Conclusions:</h3><div>APSNet offers a remarkable stride forward in thyroid nodule diagnosis by effectively addressing subjectivity and amplifying feature extraction capabilities. It proffers a more accurate and dependable diagnostic tool to clinicians.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"120 \",\"pages\":\"Article 108572\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-08-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125002336\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125002336","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:在过去的三十年中,甲状腺癌的发病率显著增加。超声作为一种非侵入性的鉴别甲状腺结节良恶性的工具。然而,它对人工输入的依赖往往会导致主观偏见。目的:本研究提出了一种新的网络架构,致力于减少人工掩模导致的主观偏差,提高当前模型的准确性。它融合了多尺度特征,可以有效地对甲状腺结节进行分类。方法:从主动式系统和被动式系统中寻找灵感,建立APSNet创新模型。它结合了注意机制来增强结节识别。该模型在局部超声图像数据集上进行了训练,并使用外部数据集TDID和TN3K进行了测试。对其性能的评估包括Dice、IoU、F1、Acc、Sen、Spe、Ppv、Npv和AUC等指标,然后进行统计测试,包括Friedman和DeLong测试。结果:APSNet在多个指标上优于现有模型,在TDID数据集上的Acc为0.9259,F1得分为0.9540,AUC为0.9243;在TN3K数据集上的Acc为0.9287,F1得分为0.9001,灵敏度为0.9273,AUC为0.9290。德隆测试证实了它的优越性,与其他模型相比有统计学上的显著改进。烧蚀研究证实了双系统设计的有效性和基于变压器的骨干结构的潜力。结论:APSNet有效地解决了主观性问题,增强了特征提取能力,在甲状腺结节诊断方面取得了显著进步。它为临床医生提供了更准确、更可靠的诊断工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A novel network for resolving subjective masking differences and accurate thyroid nodule diagnosis

A novel network for resolving subjective masking differences and accurate thyroid nodule diagnosis

Background:

Over the past three decades, there has been a significant increase in the incidence of thyroid cancer. Ultrasound serves as a non-invasive tool in differentiating between benign and malignant thyroid nodules. However, its reliance on manual input can often lead to subjective bias.

Purpose:

This study proposes a novel network architecture committed to diminishing subjective bias led by manual masks and enhancing the accuracy of the current models. It amalgamates multi-scale features for the effective classification of thyroid nodules.

Methods:

The innovative model, deemed APSNet, finds inspiration from active and passive systems. It incorporates attention mechanisms to augment nodule recognition. The model underwent training on a localized ultrasound image dataset and was tested using an external datasets TDID and TN3K. The assessment of its performance involved metrics such as Dice, IoU, F1, Acc, Sen, Spe, Ppv, Npv, and AUC, followed by statistical tests including the Friedman and DeLong tests.

Results:

APSNet outperformed existing models across multiple metrics, achieving an Acc of 0.9259, F1 score of 0.9540, and AUC of 0.9243 on the TDID dataset, and an Acc of 0.9287, F1 score of 0.9001, sensitivity of 0.9273, and AUC of 0.9290 on the TN3K dataset. The DeLong test confirmed its superiority, indicating statistically significant improvements over other models. Ablation Study confirms the effectiveness of Dual-System design and the potention of Transformer-based backbone.

Conclusions:

APSNet offers a remarkable stride forward in thyroid nodule diagnosis by effectively addressing subjectivity and amplifying feature extraction capabilities. It proffers a more accurate and dependable diagnostic tool to clinicians.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信