Ben Noordijk, Monica L Garcia Gomez, Kirsten H W J Ten Tusscher, Dick de Ridder, Aalt D J van Dijk, Robert W Smith
{"title":"科学机器学习的兴起:结合系统生物学的机械建模和机器学习的观点。","authors":"Ben Noordijk, Monica L Garcia Gomez, Kirsten H W J Ten Tusscher, Dick de Ridder, Aalt D J van Dijk, Robert W Smith","doi":"10.3389/fsysb.2024.1407994","DOIUrl":null,"url":null,"abstract":"<p><p>Both machine learning and mechanistic modelling approaches have been used independently with great success in systems biology. Machine learning excels in deriving statistical relationships and quantitative prediction from data, while mechanistic modelling is a powerful approach to capture knowledge and infer causal mechanisms underpinning biological phenomena. Importantly, the strengths of one are the weaknesses of the other, which suggests that substantial gains can be made by combining machine learning with mechanistic modelling, a field referred to as Scientific Machine Learning (SciML). In this review we discuss recent advances in combining these two approaches for systems biology, and point out future avenues for its application in the biological sciences.</p>","PeriodicalId":73109,"journal":{"name":"Frontiers in systems biology","volume":"4 ","pages":"1407994"},"PeriodicalIF":2.3000,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12341957/pdf/","citationCount":"0","resultStr":"{\"title\":\"The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology.\",\"authors\":\"Ben Noordijk, Monica L Garcia Gomez, Kirsten H W J Ten Tusscher, Dick de Ridder, Aalt D J van Dijk, Robert W Smith\",\"doi\":\"10.3389/fsysb.2024.1407994\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Both machine learning and mechanistic modelling approaches have been used independently with great success in systems biology. Machine learning excels in deriving statistical relationships and quantitative prediction from data, while mechanistic modelling is a powerful approach to capture knowledge and infer causal mechanisms underpinning biological phenomena. Importantly, the strengths of one are the weaknesses of the other, which suggests that substantial gains can be made by combining machine learning with mechanistic modelling, a field referred to as Scientific Machine Learning (SciML). In this review we discuss recent advances in combining these two approaches for systems biology, and point out future avenues for its application in the biological sciences.</p>\",\"PeriodicalId\":73109,\"journal\":{\"name\":\"Frontiers in systems biology\",\"volume\":\"4 \",\"pages\":\"1407994\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-08-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12341957/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in systems biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3389/fsysb.2024.1407994\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in systems biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3389/fsysb.2024.1407994","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology.
Both machine learning and mechanistic modelling approaches have been used independently with great success in systems biology. Machine learning excels in deriving statistical relationships and quantitative prediction from data, while mechanistic modelling is a powerful approach to capture knowledge and infer causal mechanisms underpinning biological phenomena. Importantly, the strengths of one are the weaknesses of the other, which suggests that substantial gains can be made by combining machine learning with mechanistic modelling, a field referred to as Scientific Machine Learning (SciML). In this review we discuss recent advances in combining these two approaches for systems biology, and point out future avenues for its application in the biological sciences.