{"title":"肺腺癌中代谢重编程相关基因的鉴定和预后模型的构建。","authors":"Ling Zhi Lian, Fang Huang, Jia Lang, Jing Fang Yuan, Ping Ping Hu","doi":"10.14740/wjon2604","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Lung adenocarcinoma (LUAD), the predominant histological subtype of lung cancer, persists in presenting a dismally low 5-year overall survival (OS) rate, notwithstanding advancements in treatment modalities. There exists a pressing necessity for the identification of innovative biomarkers that can enhance prognostic assessments and facilitate individualized therapeutic strategies. The objective of this investigation was to clarify the involvement of genes associated with metabolic reprogramming in the progression of LUAD and to evaluate their viability as prognostic indicators.</p><p><strong>Methods: </strong>An analysis of differential gene expression was performed utilizing The Cancer Genome Atlas (TCGA)-LUAD dataset, supplemented by a weighted gene co-expression network analysis (WGCNA). Through intersection analysis focusing on metabolic reprogramming genes (MRGs), pivotal differentially expressed metabolic reprogramming genes (hub DEMRGs) were identified. Consensus clustering categorized patients into subtypes based on these genes. Functional enrichment analysis and immune microenvironment characterization were conducted, followed by Cox and least absolute shrinkage and selection operator (LASSO) regression analyses to construct a prognostic risk model.</p><p><strong>Results: </strong>A total of 31 hub DEMRGs were identified. Patients were classified into two distinct subtypes (C1 and C2), with the C2 subtype exhibiting a markedly reduced OS rate. Functional enrichment revealed significant activation of nuclear division and cell cycle pathways in C2. Immune profiling demonstrated an immunosuppressive phenotype in C2, characterized by elevated M2 macrophage infiltration and reduced CD8<sup>+</sup> T cells. The risk model based on five critical hub DEMRGs showed robust predictive performance (area under the curve (AUC): 0.68 - 0.71), and high-risk patients displayed unique immune cell infiltration patterns.</p><p><strong>Conclusions: </strong>This research highlights the critical role of MRGs in LUAD prognosis and their potential for clinical application. The identified subtypes and risk model provide insights into tumor heterogeneity and immunosuppressive mechanisms, offering potential targets for individualized therapy.</p>","PeriodicalId":46797,"journal":{"name":"World Journal of Oncology","volume":"16 4","pages":"397-408"},"PeriodicalIF":2.2000,"publicationDate":"2025-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12339286/pdf/","citationCount":"0","resultStr":"{\"title\":\"Metabolic Reprogramming-Related Genes in Lung Adenocarcinoma: Identification and Prognostic Model Construction.\",\"authors\":\"Ling Zhi Lian, Fang Huang, Jia Lang, Jing Fang Yuan, Ping Ping Hu\",\"doi\":\"10.14740/wjon2604\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Lung adenocarcinoma (LUAD), the predominant histological subtype of lung cancer, persists in presenting a dismally low 5-year overall survival (OS) rate, notwithstanding advancements in treatment modalities. There exists a pressing necessity for the identification of innovative biomarkers that can enhance prognostic assessments and facilitate individualized therapeutic strategies. The objective of this investigation was to clarify the involvement of genes associated with metabolic reprogramming in the progression of LUAD and to evaluate their viability as prognostic indicators.</p><p><strong>Methods: </strong>An analysis of differential gene expression was performed utilizing The Cancer Genome Atlas (TCGA)-LUAD dataset, supplemented by a weighted gene co-expression network analysis (WGCNA). Through intersection analysis focusing on metabolic reprogramming genes (MRGs), pivotal differentially expressed metabolic reprogramming genes (hub DEMRGs) were identified. Consensus clustering categorized patients into subtypes based on these genes. Functional enrichment analysis and immune microenvironment characterization were conducted, followed by Cox and least absolute shrinkage and selection operator (LASSO) regression analyses to construct a prognostic risk model.</p><p><strong>Results: </strong>A total of 31 hub DEMRGs were identified. Patients were classified into two distinct subtypes (C1 and C2), with the C2 subtype exhibiting a markedly reduced OS rate. Functional enrichment revealed significant activation of nuclear division and cell cycle pathways in C2. Immune profiling demonstrated an immunosuppressive phenotype in C2, characterized by elevated M2 macrophage infiltration and reduced CD8<sup>+</sup> T cells. The risk model based on five critical hub DEMRGs showed robust predictive performance (area under the curve (AUC): 0.68 - 0.71), and high-risk patients displayed unique immune cell infiltration patterns.</p><p><strong>Conclusions: </strong>This research highlights the critical role of MRGs in LUAD prognosis and their potential for clinical application. The identified subtypes and risk model provide insights into tumor heterogeneity and immunosuppressive mechanisms, offering potential targets for individualized therapy.</p>\",\"PeriodicalId\":46797,\"journal\":{\"name\":\"World Journal of Oncology\",\"volume\":\"16 4\",\"pages\":\"397-408\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2025-07-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12339286/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"World Journal of Oncology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.14740/wjon2604\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/8/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"World Journal of Oncology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.14740/wjon2604","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/8/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"ONCOLOGY","Score":null,"Total":0}
Metabolic Reprogramming-Related Genes in Lung Adenocarcinoma: Identification and Prognostic Model Construction.
Background: Lung adenocarcinoma (LUAD), the predominant histological subtype of lung cancer, persists in presenting a dismally low 5-year overall survival (OS) rate, notwithstanding advancements in treatment modalities. There exists a pressing necessity for the identification of innovative biomarkers that can enhance prognostic assessments and facilitate individualized therapeutic strategies. The objective of this investigation was to clarify the involvement of genes associated with metabolic reprogramming in the progression of LUAD and to evaluate their viability as prognostic indicators.
Methods: An analysis of differential gene expression was performed utilizing The Cancer Genome Atlas (TCGA)-LUAD dataset, supplemented by a weighted gene co-expression network analysis (WGCNA). Through intersection analysis focusing on metabolic reprogramming genes (MRGs), pivotal differentially expressed metabolic reprogramming genes (hub DEMRGs) were identified. Consensus clustering categorized patients into subtypes based on these genes. Functional enrichment analysis and immune microenvironment characterization were conducted, followed by Cox and least absolute shrinkage and selection operator (LASSO) regression analyses to construct a prognostic risk model.
Results: A total of 31 hub DEMRGs were identified. Patients were classified into two distinct subtypes (C1 and C2), with the C2 subtype exhibiting a markedly reduced OS rate. Functional enrichment revealed significant activation of nuclear division and cell cycle pathways in C2. Immune profiling demonstrated an immunosuppressive phenotype in C2, characterized by elevated M2 macrophage infiltration and reduced CD8+ T cells. The risk model based on five critical hub DEMRGs showed robust predictive performance (area under the curve (AUC): 0.68 - 0.71), and high-risk patients displayed unique immune cell infiltration patterns.
Conclusions: This research highlights the critical role of MRGs in LUAD prognosis and their potential for clinical application. The identified subtypes and risk model provide insights into tumor heterogeneity and immunosuppressive mechanisms, offering potential targets for individualized therapy.
期刊介绍:
World Journal of Oncology, bimonthly, publishes original contributions describing basic research and clinical investigation of cancer, on the cellular, molecular, prevention, diagnosis, therapy and prognosis aspects. The submissions can be basic research or clinical investigation oriented. This journal welcomes those submissions focused on the clinical trials of new treatment modalities for cancer, and those submissions focused on molecular or cellular research of the oncology pathogenesis. Case reports submitted for consideration of publication should explore either a novel genomic event/description or a new safety signal from an oncolytic agent. The areas of interested manuscripts are these disciplines: tumor immunology and immunotherapy; cancer molecular pharmacology and chemotherapy; drug sensitivity and resistance; cancer epidemiology; clinical trials; cancer pathology; radiobiology and radiation oncology; solid tumor oncology; hematological malignancies; surgical oncology; pediatric oncology; molecular oncology and cancer genes; gene therapy; cancer endocrinology; cancer metastasis; prevention and diagnosis of cancer; other cancer related subjects. The types of manuscripts accepted are original article, review, editorial, short communication, case report, letter to the editor, book review.