马尔萨斯药物开发(MIDD)

IF 5.5 2区 医学 Q1 PHARMACOLOGY & PHARMACY
Piet H. van der Graaf
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Despite its obvious shortcomings, the Malthus model has been the basis for foundational work in a variety of scientific areas such as economics, demographics, and climate change.<span><sup>2</sup></span> However, the impact of Malthus' work in clinical pharmacology has not received much attention, although it can be argued that several fundamental pharmacokinetic–pharmacodynamic (PKPD) principles have, at least indirectly, their roots in it.</p><p>For example, after the publication of Malthus' original work, it was soon agreed that growth is typically not unbounded but capped by a maximum population size. This insight was the basis for Pierre François Verhulst to introduce the logistic growth model, which included a “carrying capacity”—the maximum population size that an environment can sustainably support. The logistic equation proposed by Verhulst is the basis for the most widely used model in pharmacology and PKPD, often referred to as the <i>E</i><sub>max</sub> model or Hill equation, which is equivalent to equations proposed by, amongst others, Langmuir and Michaelis–Menten in the fields of chemistry and enzymology.<span><sup>1, 3-5</sup></span></p><p>Another main branch that developed from the Malthus model was the work from Lotka and Volterra, who independently derived what has become known as the “predator–prey” model, adding a second species to the Malthusian population mix.<span><sup>6</sup></span> These models became the basis for studying and predicting drug effects in infectious diseases caused by, for example, human immunodeficiency virus (HIV), hepatitis B (HBV) and C virus (HCV), and coronaviruses (<b>Figure</b> 1).<span><sup>7, 8</sup></span> For example, in their seminal paper, Neumann and co-workers proposed a basic model of viral infection based on Malthusian principles to unravel the dynamics of HCV and the mechanism of action of interferon.<span><sup>9</sup></span> This work became the foundation for model-informed drug development (MIDD) in HCV and has been widely used to optimize clinical trial design and individualized dosing (<b>Figure</b> 2).<span><sup>7, 8</sup></span></p><p>In the current issue of <i>Clinical Pharmacology &amp; Therapeutics</i> (<i>CPT</i>), Cortés-Rio <i>et al</i>. provide an example of how these earlier models of viral infection dynamics can be expanded to incorporate the influences of host immune components and pharmacotherapies on virion production, resulting in a framework which more comprehensively describes viral infection dynamics, predicts patient treatment outcomes, and identifies clinical treatment response biomarkers.<span><sup>10</sup></span> They developed a mechanistic computational model of HBV which incorporates the influences of host immune responses and standard-of-care therapies (nucleos(t)ide analogues and pegylated interferon) on both infection dynamics and host prognostic/treatment response biomarkers, such as serum HBV surface antigen levels (<b>Figure</b> 2). The model was used to run an <i>in silico</i> ‘virtual’ trial, assessing if clinical treatment responses could be simulated. The virtual trial was found to robustly predict real-world patient response - functional cure - to standard-of-care therapies, thus providing evidence for the positive impact potential of mechanistic platforms in MIDD for viral diseases.</p><p>It has been proposed that the probability of success in drug development for infectious diseases is ~3-fold higher if a biomarker is available.<span><sup>11</sup></span> Cortés-Rio and co-workers show that virtual patients enabled the generation of large virology biomarker synthetic datasets, which empowered a machine learning model to predict functional cure in virtual patients with ~95% accuracy. Despite recent progress in optimizing interferon-based treatment and vaccine strategies<span><sup>12, 13</sup></span>, and the emergence of novel therapeutics such as short-interfering RNAs<span><sup>14</sup></span>, the medical need in HBV remains high, with almost 1 million people dying from it every year.<span><sup>12, 14</sup></span></p><p>Lack of reproducibility of complex mechanistic models has been a significant issue, as reported by, for example, Kirouac <i>et al</i>.<span><sup>15</sup></span> and Tiwari <i>et al</i>.<span><sup>16</sup></span> <i>CPT</i>, like many other journals, therefore, expects authors to make model code available online as supplementary material with a manuscript. Cortés-Rio <i>et al</i>. have set a new standard for this, with a 50-page appendix to their paper serving as a detailed tutorial for their model. 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Despite its obvious shortcomings, the Malthus model has been the basis for foundational work in a variety of scientific areas such as economics, demographics, and climate change.<span><sup>2</sup></span> However, the impact of Malthus' work in clinical pharmacology has not received much attention, although it can be argued that several fundamental pharmacokinetic–pharmacodynamic (PKPD) principles have, at least indirectly, their roots in it.</p><p>For example, after the publication of Malthus' original work, it was soon agreed that growth is typically not unbounded but capped by a maximum population size. This insight was the basis for Pierre François Verhulst to introduce the logistic growth model, which included a “carrying capacity”—the maximum population size that an environment can sustainably support. The logistic equation proposed by Verhulst is the basis for the most widely used model in pharmacology and PKPD, often referred to as the <i>E</i><sub>max</sub> model or Hill equation, which is equivalent to equations proposed by, amongst others, Langmuir and Michaelis–Menten in the fields of chemistry and enzymology.<span><sup>1, 3-5</sup></span></p><p>Another main branch that developed from the Malthus model was the work from Lotka and Volterra, who independently derived what has become known as the “predator–prey” model, adding a second species to the Malthusian population mix.<span><sup>6</sup></span> These models became the basis for studying and predicting drug effects in infectious diseases caused by, for example, human immunodeficiency virus (HIV), hepatitis B (HBV) and C virus (HCV), and coronaviruses (<b>Figure</b> 1).<span><sup>7, 8</sup></span> For example, in their seminal paper, Neumann and co-workers proposed a basic model of viral infection based on Malthusian principles to unravel the dynamics of HCV and the mechanism of action of interferon.<span><sup>9</sup></span> This work became the foundation for model-informed drug development (MIDD) in HCV and has been widely used to optimize clinical trial design and individualized dosing (<b>Figure</b> 2).<span><sup>7, 8</sup></span></p><p>In the current issue of <i>Clinical Pharmacology &amp; Therapeutics</i> (<i>CPT</i>), Cortés-Rio <i>et al</i>. provide an example of how these earlier models of viral infection dynamics can be expanded to incorporate the influences of host immune components and pharmacotherapies on virion production, resulting in a framework which more comprehensively describes viral infection dynamics, predicts patient treatment outcomes, and identifies clinical treatment response biomarkers.<span><sup>10</sup></span> They developed a mechanistic computational model of HBV which incorporates the influences of host immune responses and standard-of-care therapies (nucleos(t)ide analogues and pegylated interferon) on both infection dynamics and host prognostic/treatment response biomarkers, such as serum HBV surface antigen levels (<b>Figure</b> 2). 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引用次数: 0

摘要

19世纪的学者托马斯·罗伯特·马尔萨斯被广泛认为是人口模型学科的创始人,尽管在他之前600年,比萨的列奥纳多(更广为人知的名字是斐波那奇)就提出了一个描述兔子生长的数学模型。马尔萨斯在《人口原理论》中提出了一个简单的模型,描述了人口是如何呈指数增长的,而粮食产量只能线性增长。这个被称为“马尔萨斯灾难”的模型的预测是残酷的:人口增长的周期不可避免地伴随着饥荒和崩溃马尔萨斯的原始模型一直是激烈辩论的主题,其缺陷也得到了广泛认可。尽管马尔萨斯模型有明显的缺点,但它已经成为许多科学领域(如经济学、人口统计学和气候变化)基础工作的基础然而,马尔萨斯的工作对临床药理学的影响并没有受到太多的关注,尽管可以认为,几个基本的药代动力学-药效学(PKPD)原则至少间接地植根于它。例如,在马尔萨斯的原始著作出版后,人们很快就同意,增长通常不是无界的,而是受到最大人口规模的限制。这一见解是皮埃尔·弗朗索瓦·维赫尔斯特引入物流增长模型的基础,该模型包括“承载能力”——一个环境可以持续支持的最大人口规模。Verhulst提出的logistic方程是药理学和PKPD中最广泛使用的模型的基础,通常被称为Emax模型或Hill方程,它相当于化学和酶学领域的Langmuir和Michaelis-Menten等人提出的方程。从马尔萨斯模型发展而来的另一个主要分支是Lotka和Volterra的工作,他们独立地推导出了后来被称为“捕食者-猎物”模型,在马尔萨斯种群混合中增加了第二个物种这些模型成为研究和预测由人类免疫缺陷病毒(HIV)、乙型肝炎病毒(HBV)和丙型肝炎病毒(HCV)以及冠状病毒(图1)引起的传染病的药物效应的基础。例如,在他们的开创性论文中,Neumann及其同事提出了基于马尔萨斯原理的病毒感染的基本模型,以揭示HCV的动力学和干扰素的作用机制这项工作成为HCV模型知情药物开发(MIDD)的基础,并被广泛用于优化临床试验设计和个体化给药(图2)。治疗学(CPT)、cort<s:1> - rio等人提供了一个例子,说明如何将这些早期的病毒感染动力学模型扩展到纳入宿主免疫成分和药物治疗对病毒粒子产生的影响,从而形成一个更全面地描述病毒感染动力学、预测患者治疗结果和确定临床治疗反应生物标志物的框架他们开发了一种HBV的机制计算模型,该模型结合了宿主免疫反应和标准治疗(核苷类似物和聚乙二醇化干扰素)对感染动力学和宿主预后/治疗反应生物标志物(如血清HBV表面抗原水平)的影响(图2)。该模型被用于运行一个计算机“虚拟”试验,评估是否可以模拟临床治疗反应。该虚拟试验被发现可以可靠地预测现实世界患者对标准治疗的反应(功能性治愈),从而为MIDD机制平台对病毒性疾病的积极影响潜力提供证据。有人提出,如果有生物标记物可用,传染病药物开发成功的概率将提高约3倍cort<s:1> - rio及其同事表明,虚拟患者能够生成大型病毒学生物标志物合成数据集,从而使机器学习模型能够以95%的准确率预测虚拟患者的功能治愈。尽管最近在优化基于干扰素的治疗和疫苗策略方面取得了进展12,13,并且出现了短干扰RNAs14等新疗法,但HBV的医疗需求仍然很高,每年有近100万人死于HBV。12,14复杂机制模型缺乏可重复性一直是一个重大问题,如Kirouac等人15和Tiwari等人16报道的那样,CPT像许多其他期刊一样,希望作者将模型代码作为手稿的补充材料在网上提供。cort<s:1> - rio等人为此设定了一个新标准,他们的论文附录长达50页,作为他们模型的详细教程。 它非常全面,可以作为一篇独立的论文发表,但CPT编辑团队认为将原始手稿和技术附录放在一起可以更好地为读者服务。我们赞赏cort<s:1> - rio及其同事不仅提高了HBV MIDD的标准,而且提高了一般机制模型的出版标准。这项工作没有收到任何资金。作者声明对这项工作没有竞争利益。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Malthus-Informed Drug Development (MIDD)

Malthus-Informed Drug Development (MIDD)

Malthus-Informed Drug Development (MIDD)

Malthus-Informed Drug Development (MIDD)

The 19th century scholar Thomas Robert Malthus is widely regarded as the founder of the discipline of population modeling, although 600 years before him, Leonardo of Pisa (more widely known as Fibonacci) presented a mathematical model to describe the growth of rabbits. In his Essay on the Principle of Population, Malthus presented a simple model that describes how the human population grows exponentially, whereas food production can only increase linearly. The predictions of this model, which became known as “Malthusian catastrophes,” are grim: cycles of population growth inevitably followed by famine and collapse.1 Malthus' original model has been the subject of intense debate, and its flaws are widely recognized. Despite its obvious shortcomings, the Malthus model has been the basis for foundational work in a variety of scientific areas such as economics, demographics, and climate change.2 However, the impact of Malthus' work in clinical pharmacology has not received much attention, although it can be argued that several fundamental pharmacokinetic–pharmacodynamic (PKPD) principles have, at least indirectly, their roots in it.

For example, after the publication of Malthus' original work, it was soon agreed that growth is typically not unbounded but capped by a maximum population size. This insight was the basis for Pierre François Verhulst to introduce the logistic growth model, which included a “carrying capacity”—the maximum population size that an environment can sustainably support. The logistic equation proposed by Verhulst is the basis for the most widely used model in pharmacology and PKPD, often referred to as the Emax model or Hill equation, which is equivalent to equations proposed by, amongst others, Langmuir and Michaelis–Menten in the fields of chemistry and enzymology.1, 3-5

Another main branch that developed from the Malthus model was the work from Lotka and Volterra, who independently derived what has become known as the “predator–prey” model, adding a second species to the Malthusian population mix.6 These models became the basis for studying and predicting drug effects in infectious diseases caused by, for example, human immunodeficiency virus (HIV), hepatitis B (HBV) and C virus (HCV), and coronaviruses (Figure 1).7, 8 For example, in their seminal paper, Neumann and co-workers proposed a basic model of viral infection based on Malthusian principles to unravel the dynamics of HCV and the mechanism of action of interferon.9 This work became the foundation for model-informed drug development (MIDD) in HCV and has been widely used to optimize clinical trial design and individualized dosing (Figure 2).7, 8

In the current issue of Clinical Pharmacology & Therapeutics (CPT), Cortés-Rio et al. provide an example of how these earlier models of viral infection dynamics can be expanded to incorporate the influences of host immune components and pharmacotherapies on virion production, resulting in a framework which more comprehensively describes viral infection dynamics, predicts patient treatment outcomes, and identifies clinical treatment response biomarkers.10 They developed a mechanistic computational model of HBV which incorporates the influences of host immune responses and standard-of-care therapies (nucleos(t)ide analogues and pegylated interferon) on both infection dynamics and host prognostic/treatment response biomarkers, such as serum HBV surface antigen levels (Figure 2). The model was used to run an in silico ‘virtual’ trial, assessing if clinical treatment responses could be simulated. The virtual trial was found to robustly predict real-world patient response - functional cure - to standard-of-care therapies, thus providing evidence for the positive impact potential of mechanistic platforms in MIDD for viral diseases.

It has been proposed that the probability of success in drug development for infectious diseases is ~3-fold higher if a biomarker is available.11 Cortés-Rio and co-workers show that virtual patients enabled the generation of large virology biomarker synthetic datasets, which empowered a machine learning model to predict functional cure in virtual patients with ~95% accuracy. Despite recent progress in optimizing interferon-based treatment and vaccine strategies12, 13, and the emergence of novel therapeutics such as short-interfering RNAs14, the medical need in HBV remains high, with almost 1 million people dying from it every year.12, 14

Lack of reproducibility of complex mechanistic models has been a significant issue, as reported by, for example, Kirouac et al.15 and Tiwari et al.16 CPT, like many other journals, therefore, expects authors to make model code available online as supplementary material with a manuscript. Cortés-Rio et al. have set a new standard for this, with a 50-page appendix to their paper serving as a detailed tutorial for their model. It is so comprehensive that it could have been published as a standalone paper, but the CPT editorial team felt that keeping the original manuscript and technical appendix together would better serve our readers. We applaud Cortés-Rio and co-workers for raising the bar not only for HBV MIDD, but also for publication standards for mechanistic models in general.

No funding was received for this work.

The author declared no competing interests for this work.

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来源期刊
CiteScore
12.70
自引率
7.50%
发文量
290
审稿时长
2 months
期刊介绍: Clinical Pharmacology & Therapeutics (CPT) is the authoritative cross-disciplinary journal in experimental and clinical medicine devoted to publishing advances in the nature, action, efficacy, and evaluation of therapeutics. CPT welcomes original Articles in the emerging areas of translational, predictive and personalized medicine; new therapeutic modalities including gene and cell therapies; pharmacogenomics, proteomics and metabolomics; bioinformation and applied systems biology complementing areas of pharmacokinetics and pharmacodynamics, human investigation and clinical trials, pharmacovigilence, pharmacoepidemiology, pharmacometrics, and population pharmacology.
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