姜黄素多晶体相的热行为和局部结构组织:分子动力学模拟分析。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
Artem Shagurin, Michael G. Kiselev, Pal Jedlovszky, Natalia T. Correia, Frederic Affouard and Abdenacer Idrissi*, 
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引用次数: 0

摘要

姜黄素(Curcumin, CUR)是一种已知多态的生物活性化合物,在其三种晶体形式中表现出不同的构象和热物理性质。在这项研究中,我们采用分子动力学模拟来研究CUR在体相中的热行为、局部结构组织和多晶特异性稳定性。我们首先根据实验熔点、密度和构象偏好评估了四种广泛使用的经典力场(OPLS-AA、CGENFF、GAFF2和GROMOS),确定了OPLS-AA是最合适的。通过基于DFT基准的分子内二面角的定向重参数化,我们显著提高了该力场再现构象分布和熔化转变的能力。利用改进的模型,我们描述了几种结构观测值的温度依赖性,包括局部密度(通过Voronoi镶嵌)、最近邻分布、对相互作用能、氢键和分子取向。我们的研究结果表明,构象转变,包装重排和波动在多晶特定温度附近协同发生,通常从破坏π-π堆叠开始并通过晶格传播。值得注意的是,冷却模拟不能诱导再结晶,导致非晶态。这项综合分析强调了分子构象、堆积和定向相互作用之间的关键相互作用,从而确定了CUR的多态行为,为控制柔性分子固体的相变提供了机制基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Thermal Behavior and Local Structural Organization in Curcumin Polymorphs’ Bulk Phase: A Molecular Dynamics Simulation Analysis

Thermal Behavior and Local Structural Organization in Curcumin Polymorphs’ Bulk Phase: A Molecular Dynamics Simulation Analysis

Curcumin (CUR), a bioactive compound with known polymorphism, exhibits distinct conformational and thermophysical properties across its three crystalline forms. In this study, we employ molecular dynamics simulations to investigate the thermal behavior, local structural organization, and polymorph-specific stability of CUR in the bulk phase. We first evaluate four widely used classical force fields (OPLS-AA, CGENFF, GAFF2, and GROMOS) against experimental melting points, densities, and conformational preferences, identifying OPLS-AA as the most suitable one. Through targeted reparametrization of intramolecular dihedral angles based on DFT benchmarks, we significantly improve the ability of this force field to reproduce conformational distributions and melting transitions. Using the refined model, we characterize the temperature dependence of several structural observables, including local density (via Voronoi tessellation), nearest-neighbor distributions, pair interaction energies, hydrogen bonding, and molecular orientation. Our results reveal that conformational transitions, packing rearrangements, and fluctuations occur cooperatively near polymorph-specific temperatures, often beginning with disrupted π–π stacking and propagating through the lattice. Notably, cooling simulations fail to induce recrystallization, resulting in amorphous states. This comprehensive analysis highlights the critical interplay between molecular conformation, packing, and directional interactions in determining CUR’s polymorphic behavior, providing a mechanistic foundation for controlling phase transitions in flexible molecular solids.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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