利用Car-Parrinello分子动力学研究维生素B6的结构、溶解度和水溶液溶剂化

IF 3 3区 化学 Q3 CHEMISTRY, PHYSICAL
Wilson R.L. Filho , Lóide O. Sallum , Yago F. Lopes , Lilian T.F. de M. Camargo , Allane C.C. Rodrigues , Ademir.J. Camargo
{"title":"利用Car-Parrinello分子动力学研究维生素B6的结构、溶解度和水溶液溶剂化","authors":"Wilson R.L. Filho ,&nbsp;Lóide O. Sallum ,&nbsp;Yago F. Lopes ,&nbsp;Lilian T.F. de M. Camargo ,&nbsp;Allane C.C. Rodrigues ,&nbsp;Ademir.J. Camargo","doi":"10.1016/j.comptc.2025.115411","DOIUrl":null,"url":null,"abstract":"<div><div>This study aims to elucidate the influence of an aqueous environment on the geometric and electronic properties of pyridoxine through CPMD simulations. The supramolecular arrangement in the crystalline state was investigated using HS analysis, complemented by cohesive energy calculations comparing the solid and solution phases to understand the dissolution process. Helmholtz free energy calculations confirm that these interactions are thermodynamically favorable, with geometric analysis classifying them as moderately strong hydrogen bonds. Topological analysis of the electronic density revealed that two of these interactions range from weak to moderate in strength after stabilization, while the remaining two vary from weak to strong. HS analysis highlighted the presence of significant intermolecular hydrogen bonds, which are responsible for the formation of a zigzag-shaped, sheet-like crystalline network structure. Cohesive energy assessments support the experimental observation of pyridoxine's solubility in water. These findings provide valuable insights into the molecular behavior of vitamin B6 in solution, thereby enhancing our understanding of its chemical properties and biological activities.</div></div>","PeriodicalId":284,"journal":{"name":"Computational and Theoretical Chemistry","volume":"1253 ","pages":"Article 115411"},"PeriodicalIF":3.0000,"publicationDate":"2025-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Structural studies, solubility, and aqueous solvation of Vitamin B6 using Car-Parrinello Molecular Dynamics\",\"authors\":\"Wilson R.L. Filho ,&nbsp;Lóide O. Sallum ,&nbsp;Yago F. Lopes ,&nbsp;Lilian T.F. de M. Camargo ,&nbsp;Allane C.C. Rodrigues ,&nbsp;Ademir.J. Camargo\",\"doi\":\"10.1016/j.comptc.2025.115411\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This study aims to elucidate the influence of an aqueous environment on the geometric and electronic properties of pyridoxine through CPMD simulations. The supramolecular arrangement in the crystalline state was investigated using HS analysis, complemented by cohesive energy calculations comparing the solid and solution phases to understand the dissolution process. Helmholtz free energy calculations confirm that these interactions are thermodynamically favorable, with geometric analysis classifying them as moderately strong hydrogen bonds. Topological analysis of the electronic density revealed that two of these interactions range from weak to moderate in strength after stabilization, while the remaining two vary from weak to strong. HS analysis highlighted the presence of significant intermolecular hydrogen bonds, which are responsible for the formation of a zigzag-shaped, sheet-like crystalline network structure. Cohesive energy assessments support the experimental observation of pyridoxine's solubility in water. These findings provide valuable insights into the molecular behavior of vitamin B6 in solution, thereby enhancing our understanding of its chemical properties and biological activities.</div></div>\",\"PeriodicalId\":284,\"journal\":{\"name\":\"Computational and Theoretical Chemistry\",\"volume\":\"1253 \",\"pages\":\"Article 115411\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-08-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and Theoretical Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2210271X25003470\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and Theoretical Chemistry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2210271X25003470","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

本研究旨在通过CPMD模拟来阐明水环境对吡哆醇几何和电子性质的影响。利用HS分析研究了晶体状态下的超分子排列,并通过比较固相和固相的内聚能计算来了解溶解过程。亥姆霍兹自由能计算证实,这些相互作用在热力学上是有利的,几何分析将它们归类为中等强度的氢键。电子密度的拓扑分析表明,稳定后,其中两个相互作用的强度从弱到中等,而其余两个相互作用的强度从弱到强。HS分析强调了分子间氢键的存在,这是形成锯齿状片状晶体网络结构的原因。内聚能评价支持了吡哆醇在水中溶解度的实验观察。这些发现为研究维生素B6在溶液中的分子行为提供了有价值的见解,从而增强了我们对其化学性质和生物活性的理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Structural studies, solubility, and aqueous solvation of Vitamin B6 using Car-Parrinello Molecular Dynamics

Structural studies, solubility, and aqueous solvation of Vitamin B6 using Car-Parrinello Molecular Dynamics
This study aims to elucidate the influence of an aqueous environment on the geometric and electronic properties of pyridoxine through CPMD simulations. The supramolecular arrangement in the crystalline state was investigated using HS analysis, complemented by cohesive energy calculations comparing the solid and solution phases to understand the dissolution process. Helmholtz free energy calculations confirm that these interactions are thermodynamically favorable, with geometric analysis classifying them as moderately strong hydrogen bonds. Topological analysis of the electronic density revealed that two of these interactions range from weak to moderate in strength after stabilization, while the remaining two vary from weak to strong. HS analysis highlighted the presence of significant intermolecular hydrogen bonds, which are responsible for the formation of a zigzag-shaped, sheet-like crystalline network structure. Cohesive energy assessments support the experimental observation of pyridoxine's solubility in water. These findings provide valuable insights into the molecular behavior of vitamin B6 in solution, thereby enhancing our understanding of its chemical properties and biological activities.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
4.20
自引率
10.70%
发文量
331
审稿时长
31 days
期刊介绍: Computational and Theoretical Chemistry publishes high quality, original reports of significance in computational and theoretical chemistry including those that deal with problems of structure, properties, energetics, weak interactions, reaction mechanisms, catalysis, and reaction rates involving atoms, molecules, clusters, surfaces, and bulk matter.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信