解码PDI多样性:对高粱结构、域和功能的洞察。

IF 4.1 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Computational and structural biotechnology journal Pub Date : 2025-07-25 eCollection Date: 2025-01-01 DOI:10.1016/j.csbj.2025.07.035
Carla F López-Gómez, Marc T Morris, Karen Massel, Millicent Smith, Peter Crisp, Gerhard Schenk, Ian D Godwin
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引用次数: 0

摘要

蛋白质在细胞功能中起着不可或缺的作用,既是结构成分,也是重要生物过程的催化剂。它们正确折叠成三维结构对功能至关重要。为了确保正确折叠,蛋白质与伴侣蛋白和折叠催化剂(如蛋白质二硫异构酶)相互作用,蛋白质二硫异构酶通过连接半胱氨酸残基来帮助二硫键的形成和重排,从而稳定蛋白质。pdi是硫氧还蛋白(TRX)超家族的一部分,其特征是保守的CXXC基序有助于其氧化还原电位。它们具有异构酶和氧化还原酶活性,这使它们能够重新排列并形成新的二硫键。高粱PDI家族成员(SbPDI)在种间甚至种内的域序、结构和结构上呈现出广泛而未被探索的多样性。为了揭示这种多样性,我们在高粱中鉴定并表征了PDI家族成员,以探索它们的结构域结构、三维结构和功能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Decoding PDI diversity: Insights into structure, domains, and functionality in sorghum.

Proteins play indispensable roles in cellular function, acting as both structural components and catalysts for essential biological processes. Their proper folding into three-dimensional structures is critical for functionality. To ensure correct folding, proteins interact with chaperones and folding catalysts such as Protein Disulfide Isomerases (PDIs), which assist in the formation and rearrangement of disulfide bonds that stabilize proteins by linking cysteine residues. PDIs are part of the thioredoxin (TRX) superfamily and are characterized by a conserved CXXC motif that contributes to their redox potential. They exhibit isomerase and oxidoreductase activities, that enable them to rearrange and form new disulfide bonds. PDI family members in sorghum (SbPDI) present a broad and largely unexplored diversity in domain order, structure, and architecture between or even within species. To shed light on this diversity, we identified and characterized PDI family members in sorghum in silico to explore their domain architecture, three-dimensional structure and functionality.

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来源期刊
Computational and structural biotechnology journal
Computational and structural biotechnology journal Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
9.30
自引率
3.30%
发文量
540
审稿时长
6 weeks
期刊介绍: Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to: Structure and function of proteins, nucleic acids and other macromolecules Structure and function of multi-component complexes Protein folding, processing and degradation Enzymology Computational and structural studies of plant systems Microbial Informatics Genomics Proteomics Metabolomics Algorithms and Hypothesis in Bioinformatics Mathematical and Theoretical Biology Computational Chemistry and Drug Discovery Microscopy and Molecular Imaging Nanotechnology Systems and Synthetic Biology
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