[甾醇载体蛋白2基因与前列腺癌的关系:基于单细胞RNA测序结合孟德尔随机化]。

Q4 Medicine
中华男科学杂志 Pub Date : 2025-05-01
Jia-Xin Ning, Shu-Hang Luo, Hao-Ran Wang, Hui-Min Hou, Ming Liu
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引用次数: 0

摘要

目的:利用单细胞转录组结合孟德尔随机化方法,从多组学角度探讨脂质代谢相关基因甾醇载体蛋白2(SCP2)与前列腺癌(PCa)的关系。方法:分别从GSE120716、GSE157703和GSE141445数据集中获取良性和恶性前列腺组织的单细胞转录组数据。对数据进行整合、质量控制和注释,将上皮细胞分为高和低SCP2表达组,然后进行进一步的差异和轨迹分析。随后,从基因型-组织表达(GTEx)中下载SCP2表达数量性状位点(eQTL)的单核苷酸多态性(SNP)数据,并从PCa协会癌症相关基因组改变调查小组(PRACTICAL)中进行研究,获得PCa结果数据,用于孟德尔随机化分析,以验证SCP2与PCa之间的因果关系。结果:高表达scp2的上皮细胞具有更高的能量代谢和增殖能力,免疫治疗反应和转移倾向较低。轨迹分析表明,SCP2高表达的上皮细胞可能具有更高的恶性程度,SCP2可能是前列腺恶性上皮细胞分化的关键标记基因。进一步的孟德尔随机化结果显示,SCP2与PCa的发展存在显著的因果关系(OR=1.045, 95% CI: 1.010 -1.083, P=0.011)。结论:通过单细胞转录组和孟德尔随机化的结合,证实了脂质代谢相关基因SCP2在PCa发生发展中的作用,为PCa治疗提供了新的靶点和治疗方向。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
[Relationship between sterol carrier protein 2 gene and prostate cancer: Based on single-cell RNA sequencing combined with Mendelian randomization].

Objective: To investigate the relationship between the lipid metabolism-related gene sterol carrier protein 2(SCP2) and prostate cancer (PCa) from a multi-omics perspective using single-cell transcriptomes combined with Mendelian randomization. Methods: Single-cell transcriptome data of benign and malignant prostate tissues were obtained from GSE120716, GSE157703 and GSE141445 datasets, respectively. Integration, quality control and annotation were performed on the data to categorize the epithelial cells into high and low SCP2 expression groups, followed by further differential and trajectory analyses. Single nucleotide polymorphism (SNP) data for SCP2 expression quantitative trait loci (eQTL) were subsequently downloaded from Genotype-Tissue Expression (GTEx) and investigated from the PCa Society Cancer-Related Genomic Alteration Panel for the Investigation of Cancer-Related Alterations (PRACTICAL) to obtain PCa outcome data for Mendelian randomization analysis to validate the causal relationship between SCP2 and PCa. Results: High SCP2-expressing epithelial cells had higher energy metabolism and proliferation capacity with low immunotherapy response and metastatic tendency. Trajectory analysis showed that epithelial cells with high SCP2 expression may have a higher degree of malignancy, and SCP2 may be a key marker gene for differentiation of malignant epithelial cells in the prostate. Further Mendelian randomization results showed a significant causal relationship between SCP2 and PCa development (OR=1.045, 95% CI: 1.010 -1.083, P=0.011). Conclusion: By combining single-cell transcriptome and Mendelian randomization, the role of the lipid metabolism-related gene SCP2 in PCa development has been confirmed, and new targets and therapeutic directions for PCa treatment have been provided.

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来源期刊
中华男科学杂志
中华男科学杂志 Medicine-Medicine (all)
CiteScore
0.40
自引率
0.00%
发文量
5367
期刊介绍: National journal of andrology was founded in June 1995. It is a core journal of andrology and reproductive medicine, published monthly, and is publicly distributed at home and abroad. The main columns include expert talks, monographs (basic research, clinical research, evidence-based medicine, traditional Chinese medicine), reviews, clinical experience exchanges, case reports, etc. Priority is given to various fund-funded projects, especially the 12th Five-Year National Support Plan and the National Natural Science Foundation funded projects. This journal is included in about 20 domestic databases, including the National Science and Technology Paper Statistical Source Journal (China Science and Technology Core Journal), the Source Journal of the China Science Citation Database, the Statistical Source Journal of the China Academic Journal Comprehensive Evaluation Database (CAJCED), the Full-text Collection Journal of the China Journal Full-text Database (CJFD), the Overview of the Chinese Core Journals (2017 Edition), and the Source Journal of the Top Academic Papers of China's Fine Science and Technology Journals (F5000). It has been included in the full text of the American Chemical Abstracts, the American MEDLINE, the American EBSCO, and the database.
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