Alexander D. Maitland, Nicholas R. Gonzalez, Donna Walther, Francisco Pereira, Michael H. Baumann and Grant C. Glatfelter*,
{"title":"使用DeepLabCut和简单的行为分析快速、开源和自动量化C57BL/6J小鼠的头抽搐反应","authors":"Alexander D. Maitland, Nicholas R. Gonzalez, Donna Walther, Francisco Pereira, Michael H. Baumann and Grant C. Glatfelter*, ","doi":"10.1021/acsptsci.5c00305","DOIUrl":null,"url":null,"abstract":"<p >Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT<sub>2A</sub>) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated approach for quantifying HTRs from experimental videos using the open-source machine learning-based toolkits, DeepLabCut (DLC) and Simple Behavioral Analysis (SimBA). Pose estimation DLC models were trained to predict <i>X</i>,<i>Y</i> coordinates of 13 body parts of C57BL/6J mice using historical experimental videos of HTRs induced by various psychedelic drugs. Next, a nonoverlapping set of historical experimental videos was analyzed and used to train SimBA random forest behavioral classifiers to predict the presence of the HTR. The DLC + SimBA approach was then validated using a separate subset of visually scored videos. DLC + SimBA model performance was assessed at different video resolutions (50%, 25%, 12.5%) and frame rates (120, 60, 30 frames per second or fps). Our results indicate that HTRs can be quantified accurately at 50% resolution and 120 fps (precision = 95.45, recall = 95.56, <i>F</i><sub>1</sub> = 95.51) or at lower frame rates and resolutions (i.e., 50% resolution and 60 fps). The best performing DLC + SimBA model combination was deployed to evaluate the effects of bufotenine, a tryptamine derivative with uncharacterized potency and efficacy in the modern HTR paradigm. Interestingly, bufotenine only induced elevated HTRs (ED<sub>50</sub> = 0.99 mg/kg, max counts = 24) when serotonin 1A receptors (5-HT<sub>1A</sub>) were pharmacologically blocked and activity at other sites of action may also impact its pharmacological effects (e.g., serotonin transporter). HTR counts for a subset of 21 videos from bufotenine experiments were strongly correlated for DLC + SimBA vs visual scoring and semi-automated software detection methods (<i>r</i> = 0.98 and 0.99). Finally, the DLC + SimBA approach displayed high accuracy when compared to visual scoring of HTRs for three serotonergic psychedelic drugs with variable HTR frequencies (<i>r</i> = 0.99 vs mean visual scores from 3 blinded raters). In summary, the DLC + SimBA approach represents a modular, noninvasive, and open-source method of HTR detection from experimental videos with accuracy comparable to magnetometer-based approaches and greater speed than visual scoring.</p>","PeriodicalId":36426,"journal":{"name":"ACS Pharmacology and Translational Science","volume":"8 8","pages":"2694–2709"},"PeriodicalIF":3.7000,"publicationDate":"2025-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Rapid, Open-Source, and Automated Quantification of the Head Twitch Response in C57BL/6J Mice Using DeepLabCut and Simple Behavioral Analysis\",\"authors\":\"Alexander D. Maitland, Nicholas R. Gonzalez, Donna Walther, Francisco Pereira, Michael H. Baumann and Grant C. Glatfelter*, \",\"doi\":\"10.1021/acsptsci.5c00305\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT<sub>2A</sub>) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated approach for quantifying HTRs from experimental videos using the open-source machine learning-based toolkits, DeepLabCut (DLC) and Simple Behavioral Analysis (SimBA). Pose estimation DLC models were trained to predict <i>X</i>,<i>Y</i> coordinates of 13 body parts of C57BL/6J mice using historical experimental videos of HTRs induced by various psychedelic drugs. Next, a nonoverlapping set of historical experimental videos was analyzed and used to train SimBA random forest behavioral classifiers to predict the presence of the HTR. The DLC + SimBA approach was then validated using a separate subset of visually scored videos. DLC + SimBA model performance was assessed at different video resolutions (50%, 25%, 12.5%) and frame rates (120, 60, 30 frames per second or fps). Our results indicate that HTRs can be quantified accurately at 50% resolution and 120 fps (precision = 95.45, recall = 95.56, <i>F</i><sub>1</sub> = 95.51) or at lower frame rates and resolutions (i.e., 50% resolution and 60 fps). The best performing DLC + SimBA model combination was deployed to evaluate the effects of bufotenine, a tryptamine derivative with uncharacterized potency and efficacy in the modern HTR paradigm. Interestingly, bufotenine only induced elevated HTRs (ED<sub>50</sub> = 0.99 mg/kg, max counts = 24) when serotonin 1A receptors (5-HT<sub>1A</sub>) were pharmacologically blocked and activity at other sites of action may also impact its pharmacological effects (e.g., serotonin transporter). HTR counts for a subset of 21 videos from bufotenine experiments were strongly correlated for DLC + SimBA vs visual scoring and semi-automated software detection methods (<i>r</i> = 0.98 and 0.99). Finally, the DLC + SimBA approach displayed high accuracy when compared to visual scoring of HTRs for three serotonergic psychedelic drugs with variable HTR frequencies (<i>r</i> = 0.99 vs mean visual scores from 3 blinded raters). 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Rapid, Open-Source, and Automated Quantification of the Head Twitch Response in C57BL/6J Mice Using DeepLabCut and Simple Behavioral Analysis
Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT2A) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated approach for quantifying HTRs from experimental videos using the open-source machine learning-based toolkits, DeepLabCut (DLC) and Simple Behavioral Analysis (SimBA). Pose estimation DLC models were trained to predict X,Y coordinates of 13 body parts of C57BL/6J mice using historical experimental videos of HTRs induced by various psychedelic drugs. Next, a nonoverlapping set of historical experimental videos was analyzed and used to train SimBA random forest behavioral classifiers to predict the presence of the HTR. The DLC + SimBA approach was then validated using a separate subset of visually scored videos. DLC + SimBA model performance was assessed at different video resolutions (50%, 25%, 12.5%) and frame rates (120, 60, 30 frames per second or fps). Our results indicate that HTRs can be quantified accurately at 50% resolution and 120 fps (precision = 95.45, recall = 95.56, F1 = 95.51) or at lower frame rates and resolutions (i.e., 50% resolution and 60 fps). The best performing DLC + SimBA model combination was deployed to evaluate the effects of bufotenine, a tryptamine derivative with uncharacterized potency and efficacy in the modern HTR paradigm. Interestingly, bufotenine only induced elevated HTRs (ED50 = 0.99 mg/kg, max counts = 24) when serotonin 1A receptors (5-HT1A) were pharmacologically blocked and activity at other sites of action may also impact its pharmacological effects (e.g., serotonin transporter). HTR counts for a subset of 21 videos from bufotenine experiments were strongly correlated for DLC + SimBA vs visual scoring and semi-automated software detection methods (r = 0.98 and 0.99). Finally, the DLC + SimBA approach displayed high accuracy when compared to visual scoring of HTRs for three serotonergic psychedelic drugs with variable HTR frequencies (r = 0.99 vs mean visual scores from 3 blinded raters). In summary, the DLC + SimBA approach represents a modular, noninvasive, and open-source method of HTR detection from experimental videos with accuracy comparable to magnetometer-based approaches and greater speed than visual scoring.
期刊介绍:
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