利用T细胞受体谱的机器学习从外周血中检测乳腺癌。

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Miriam Zuckerbrot-Schuldenfrei, Ari Raphael, Alona Zilberberg, Sol Efroni
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引用次数: 0

摘要

免疫系统的防御能力依赖于T淋巴细胞和B淋巴细胞的多样性。T细胞受体(tcr)是通过V(D)J重组产生的,其中不同的遗传元件结合并经过修饰,产生广泛的变异性。乳腺癌是女性中最常见的癌症,早期发现有时有助于进行高效且有可能治愈的治疗。TCR表可以提供关于肿瘤状态的信息。为了验证这一点,我们研究了外周血TCR库及其与肿瘤状态的关系。我们收集了98名妇女的血液样本,包括病人和健康的献血者。在TCR分析之后,这些数据的机器学习能够以高精度(平均AUC为0.96)显示TCR特征与乳腺癌存在或不存在之间的关联。我们的发现表明,免疫系统保留了与肿瘤相关的、与tcr相关的、可在血液中检测到的信号。无论是在检测领域还是在治疗领域,这些信息都有可能使这些知识的未来衍生品受益。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Breast cancer is detectable from peripheral blood using machine learning over T cell receptor repertoires.

Breast cancer is detectable from peripheral blood using machine learning over T cell receptor repertoires.

Breast cancer is detectable from peripheral blood using machine learning over T cell receptor repertoires.

Breast cancer is detectable from peripheral blood using machine learning over T cell receptor repertoires.

The immune system's defense abilities rely on the diversity of T and B lymphocytes. T Cell Receptors (TCRs) are generated through V(D)J recombination, where distinct genetic elements combine and undergo modifications, creating extensive variability. In breast cancer, the most frequently diagnosed cancer in women, early detection sometimes helps with highly effective and potentially curative treatment. The TCR repertoire may provide information about tumor status. To test this, we investigated the peripheral blood TCR repertoire and its association with tumor status. We collected blood samples from 98 women, including patients and healthy donors. Following TCR profiling, machine learning of these data was able to show an association between TCR profiles and breast cancer presence or absence with high accuracy (average AUC of 0.96). Our findings imply the immune system retains tumor-relevant, TCR-related, signals detectable in blood. This information could potentially benefit future derivatives from this knowledge, either in the field of detection or treatment.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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