长期耕作改变了细菌对木糖和纤维素的同化。

IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Applied and Environmental Microbiology Pub Date : 2025-09-17 Epub Date: 2025-08-06 DOI:10.1128/aem.00933-25
Marie Schaedel, Chantal Koechli, Daniel H Buckley
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引用次数: 0

摘要

微生物生长动力学通过将碳输入转化为可用于稳定土壤表面的微生物产物来决定土壤中的碳命运。耕作等管理措施扰乱了微生物群落,促进了碳的流失,但耕作在多大程度上改变了土壤中碳的细菌代谢,目前还没有得到充分的描述。我们进行了一项多基质DNA稳定同位素探测试验,使用了42年免耕或每年犁耕的长期田间试验土壤。我们预测,由于细菌生长反应的差异,这种土地利用历史将改变C同化动力学。我们用13c -木糖和13c -纤维素培养不同耕作方式的土壤,这两种基质的生物利用度不同,有利于土壤中不同的细菌生活史策略。我们鉴定了730个13c标记的细菌分类群,并在30天的时间内跟踪了它们在散装土壤中的丰度。土壤中碳的添加迅速改变了细菌群落的结构和功能。木糖和纤维素的13c标记动态在耕作和免耕土壤之间存在显著差异。与免耕土壤相比,耕作土壤中细菌木糖代谢表现出明显的滞后,这种滞后与木糖矿化率较低相对应。此外,免耕土壤细菌纤维素代谢主要由特殊类群介导,而双结合菌在耕作土壤中占主导地位。碳同化的差异对应于耕作土壤中较低的纤维素矿化率和累积纤维素矿化。我们表明,土壤管理实践通过改变与细菌生活史策略相关的动态生长响应,塑造了碳通过细菌群落的路径。我们在一个微观实验中应用DNA稳定同位素探测来了解土壤管理(耕作vs免耕)在塑造细菌碳循环中的作用。我们的假设是,通过耕作造成的干扰会对细菌生长动态产生选择性影响,从而改变细菌对添加的碳基质的处理。我们发现,在耕作土壤中,生长滞后导致木糖的细菌同化延迟,形成以木糖和纤维素共代谢为特征的流线型单碳“通道”。在免耕土壤中,细菌通过不同的碳“通道”同化木糖和纤维素的时间差异与相对于耕作土壤较高的碳矿化率和总矿化有关。研究结果表明,土壤管理措施改变了活性炭循环细菌的生长动态。与扰动史相关的生长滞后导致碳矿化减少。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Long term tillage regime alters bacterial assimilation of xylose and cellulose.

Microbial growth dynamics determine carbon fate in soil by transforming carbon inputs into microbial products available for stabilization on soil surfaces. Management practices such as tillage disturb microbial communities and promote C loss, but the degree to which tillage alters bacterial metabolism of soil C remains poorly described. We conducted a multi-substrate DNA stable isotope probing experiment using soil from a long-term field experiment with a 42-year legacy of either no-till or annual moldboard plowing. We predicted that this land use history would alter C assimilation dynamics due to differences in bacterial growth responses. We incubated soil from each tillage regime with 13C-xylose and 13C-cellulose, substrates that differ in bioavailability and which favor different bacterial life history strategies in soil. We identified 730 13C-labeled bacterial taxa and tracked their abundance in bulk soil over a 30 day period. Carbon addition to soil rapidly altered bacterial community structure and function. 13C-labeling dynamics differed substantially between tilled and no-till soils with respect to both xylose and cellulose. Bacterial xylose metabolism in tilled soils exhibited substantial lag relative to no-till soils, and this lag corresponded with lower mineralization rates for xylose. In addition, bacterial cellulose metabolism was mediated primarily by specialist taxa in no-till soils, while dual incorporators dominated tilled soils. Differences in carbon assimilation corresponded to lower cellulose mineralization rates and cumulative cellulose mineralization in tilled soils. We show that soil management practices shape the path of carbon through bacterial communities by altering dynamic growth responses associated with bacterial life history strategies.IMPORTANCEWe applied DNA stable isotope probing in a microcosm experiment to understand the role of soil management (till vs no-till) in shaping bacterial carbon cycling. Our hypothesis was that a legacy of disturbance through tillage would exert a selective influence on bacterial growth dynamics, thereby altering bacterial processing of added carbon substrates. We found that lagged growth in tilled soil resulted in delayed bacterial assimilation of xylose and a streamlined, single carbon "channel" characterized by the co-metabolism of xylose and cellulose. In no-till soil, temporally distinct bacterial assimilation of xylose and cellulose by separate carbon "channels" was associated with higher carbon mineralization rates and total mineralization relative to tilled soil. Our findings indicate that soil management practices altered the growth dynamics of active carbon cycling bacteria. Lagged growth associated with a history of disturbance resulted in reduced carbon mineralization.

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来源期刊
Applied and Environmental Microbiology
Applied and Environmental Microbiology 生物-生物工程与应用微生物
CiteScore
7.70
自引率
2.30%
发文量
730
审稿时长
1.9 months
期刊介绍: Applied and Environmental Microbiology (AEM) publishes papers that make significant contributions to (a) applied microbiology, including biotechnology, protein engineering, bioremediation, and food microbiology, (b) microbial ecology, including environmental, organismic, and genomic microbiology, and (c) interdisciplinary microbiology, including invertebrate microbiology, plant microbiology, aquatic microbiology, and geomicrobiology.
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