生物信息学分析识别针对escc关键相关基因的内分泌干扰化学物质。

IF 2.7 4区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics
Yinnan Zhu, Weitao Shen, Mingyue Li
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引用次数: 0

摘要

食管鳞状细胞癌(ESCC)在东亚地区具有很高的发病率和死亡率,是由遗传改变和环境暴露之间复杂的相互作用引起的。在环境风险因素中,内分泌干扰物质(EDCs)引起了广泛关注,但其通过基因相互作用对ESCC的影响尚不清楚。本研究结合生物信息学分析来鉴定与ESCC发病相关的关键基因和EDCs。化学-基因相互作用数据来自比较毒物基因组学数据库(CTD),差异表达基因(deg)来自基因表达综合数据库(GEO)。LASSO回归分析优先选择了5个关键基因(BUB1B、TPM2、KRT17、ADH1B、SALL4)。基于这些基因,鉴定出25个可能参与ESCC的EDCs,其中13个(如苯并[a]芘)靶向至少3个关键基因。这些发现提示了一个新的edc -基因-ESCC相互作用网络,并为ESCC潜在的环境机制提供了见解,为风险评估和治疗干预提供了潜在的靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bioinformatics analysis to identify endocrine-disrupting chemicals targeting key ESCC-related genes.

Esophageal squamous cell carcinoma (ESCC), which has a high incidence and mortality rate in East Asia, arises from a complex interplay between genetic alterations and environmental exposures. Among environmental risk factors, endocrine-disrupting chemicals (EDCs) have attracted widespread attention, yet their impact on ESCC via gene interactions remains underexplored. This study integrated bioinformatics analysis to identify key genes and EDCs associated with ESCC pathogenesis. Chemical-gene interaction data were obtained from the Comparative Toxicogenomics Database(CTD), and differentially expressed genes(DEGs) were screened from the Gene Expression Omnibus (GEO) database. LASSO regression analysis prioritized five key genes (BUB1B, TPM2, KRT17, ADH1B, SALL4). Based on these genes, 25 EDCs potentially involved in ESCC were identified, of which 13 (such as benzo[a]pyrene) targeted at least three of the key genes. These findings suggested a novel EDC-gene-ESCC interaction network and provide insights into the environmental mechanisms underlying ESCC, offering potential targets for risk assessment and therapeutic intervention.

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来源期刊
CiteScore
6.60
自引率
3.10%
发文量
66
审稿时长
6-12 weeks
期刊介绍: Toxicology Mechanisms and Methods is a peer-reviewed journal whose aim is twofold. Firstly, the journal contains original research on subjects dealing with the mechanisms by which foreign chemicals cause toxic tissue injury. Chemical substances of interest include industrial compounds, environmental pollutants, hazardous wastes, drugs, pesticides, and chemical warfare agents. The scope of the journal spans from molecular and cellular mechanisms of action to the consideration of mechanistic evidence in establishing regulatory policy. Secondly, the journal addresses aspects of the development, validation, and application of new and existing laboratory methods, techniques, and equipment.
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