{"title":"ToxAI_assistant:一个综合研究大鼠口服和静脉给药后外源性药物急性毒性的网络平台。","authors":"O V Tinkov, V Y Grigorev","doi":"10.1080/1062936X.2025.2535606","DOIUrl":null,"url":null,"abstract":"<p><p>The existing QSAR approaches for mammalian acute toxicity have been limited in scope, often relying on small or narrowly focused datasets and on classification endpoints. In contrast, our work leverages a sufficiently large curated dataset (9843 rat oral and 2323 intravenous LD<sub>50</sub> values) to build regression models of acute toxicity. The best-performing QSAR models developed using 2D RDKit descriptors and the Cat Boost method achieve <i>Q</i><sup>2</sup> <sub>test</sub> = 0.66 at a data coverage of at least 77% within the applicability domain (AD) during validation of test sets. All models were rigorously validated according to OECD QSAR principles with clearly defined endpoints, explicit algorithms, and a well-characterized AD. The best QSAR models are integrated into the ToxAI_assistant web platform (https://tox-ai-assistant.streamlit.app/), which includes toxicity-level prediction with allowance for AD in terms of World Health Organization (WHO). We also provide mechanistic insight by identifying key toxicophores - substructural features statistically associated with high toxicity - thereby offering a structural interpretation. In sum, these elements (large and diverse data, regression modelling, WHO-based categorization, detailed fragment analysis, and AD assessment) together address the gaps of earlier studies and constitute the core novelty of our approach.</p>","PeriodicalId":21446,"journal":{"name":"SAR and QSAR in Environmental Research","volume":" ","pages":"555-582"},"PeriodicalIF":2.3000,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"ToxAI_assistant: a web platform for a comprehensive study of the acute toxicity of xenobiotics following oral and intravenous administration in rats.\",\"authors\":\"O V Tinkov, V Y Grigorev\",\"doi\":\"10.1080/1062936X.2025.2535606\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The existing QSAR approaches for mammalian acute toxicity have been limited in scope, often relying on small or narrowly focused datasets and on classification endpoints. In contrast, our work leverages a sufficiently large curated dataset (9843 rat oral and 2323 intravenous LD<sub>50</sub> values) to build regression models of acute toxicity. The best-performing QSAR models developed using 2D RDKit descriptors and the Cat Boost method achieve <i>Q</i><sup>2</sup> <sub>test</sub> = 0.66 at a data coverage of at least 77% within the applicability domain (AD) during validation of test sets. All models were rigorously validated according to OECD QSAR principles with clearly defined endpoints, explicit algorithms, and a well-characterized AD. The best QSAR models are integrated into the ToxAI_assistant web platform (https://tox-ai-assistant.streamlit.app/), which includes toxicity-level prediction with allowance for AD in terms of World Health Organization (WHO). We also provide mechanistic insight by identifying key toxicophores - substructural features statistically associated with high toxicity - thereby offering a structural interpretation. In sum, these elements (large and diverse data, regression modelling, WHO-based categorization, detailed fragment analysis, and AD assessment) together address the gaps of earlier studies and constitute the core novelty of our approach.</p>\",\"PeriodicalId\":21446,\"journal\":{\"name\":\"SAR and QSAR in Environmental Research\",\"volume\":\" \",\"pages\":\"555-582\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2025-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"SAR and QSAR in Environmental Research\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.1080/1062936X.2025.2535606\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/8/5 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"SAR and QSAR in Environmental Research","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1080/1062936X.2025.2535606","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/8/5 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
ToxAI_assistant: a web platform for a comprehensive study of the acute toxicity of xenobiotics following oral and intravenous administration in rats.
The existing QSAR approaches for mammalian acute toxicity have been limited in scope, often relying on small or narrowly focused datasets and on classification endpoints. In contrast, our work leverages a sufficiently large curated dataset (9843 rat oral and 2323 intravenous LD50 values) to build regression models of acute toxicity. The best-performing QSAR models developed using 2D RDKit descriptors and the Cat Boost method achieve Q2test = 0.66 at a data coverage of at least 77% within the applicability domain (AD) during validation of test sets. All models were rigorously validated according to OECD QSAR principles with clearly defined endpoints, explicit algorithms, and a well-characterized AD. The best QSAR models are integrated into the ToxAI_assistant web platform (https://tox-ai-assistant.streamlit.app/), which includes toxicity-level prediction with allowance for AD in terms of World Health Organization (WHO). We also provide mechanistic insight by identifying key toxicophores - substructural features statistically associated with high toxicity - thereby offering a structural interpretation. In sum, these elements (large and diverse data, regression modelling, WHO-based categorization, detailed fragment analysis, and AD assessment) together address the gaps of earlier studies and constitute the core novelty of our approach.
期刊介绍:
SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.