ToxAI_assistant:一个综合研究大鼠口服和静脉给药后外源性药物急性毒性的网络平台。

IF 2.3 3区 环境科学与生态学 Q3 CHEMISTRY, MULTIDISCIPLINARY
O V Tinkov, V Y Grigorev
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引用次数: 0

摘要

哺乳动物急性毒性的现有QSAR方法范围有限,通常依赖于小型或狭窄的数据集和分类终点。相比之下,我们的工作利用了一个足够大的整理数据集(9843只大鼠口服和2323只静脉注射LD50值)来构建急性毒性的回归模型。在测试集验证期间,使用2D RDKit描述符和Cat Boost方法开发的性能最好的QSAR模型在适用性域(AD)内的数据覆盖率至少为77%时实现Q2测试= 0.66。所有模型都根据OECD QSAR原则进行了严格验证,具有明确定义的终点,明确的算法和良好表征的AD。最好的QSAR模型被整合到ToxAI_assistant网络平台(https://tox-ai-assistant.streamlit.app/),其中包括根据世界卫生组织(WHO)考虑AD的毒性水平预测。我们还通过识别关键的毒性基团-统计上与高毒性相关的亚结构特征-从而提供结构解释,从而提供机制见解。总而言之,这些要素(庞大而多样的数据、回归模型、基于世卫组织的分类、详细的片段分析和AD评估)共同弥补了早期研究的空白,构成了我们方法的核心新颖性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
ToxAI_assistant: a web platform for a comprehensive study of the acute toxicity of xenobiotics following oral and intravenous administration in rats.

The existing QSAR approaches for mammalian acute toxicity have been limited in scope, often relying on small or narrowly focused datasets and on classification endpoints. In contrast, our work leverages a sufficiently large curated dataset (9843 rat oral and 2323 intravenous LD50 values) to build regression models of acute toxicity. The best-performing QSAR models developed using 2D RDKit descriptors and the Cat Boost method achieve Q2 test = 0.66 at a data coverage of at least 77% within the applicability domain (AD) during validation of test sets. All models were rigorously validated according to OECD QSAR principles with clearly defined endpoints, explicit algorithms, and a well-characterized AD. The best QSAR models are integrated into the ToxAI_assistant web platform (https://tox-ai-assistant.streamlit.app/), which includes toxicity-level prediction with allowance for AD in terms of World Health Organization (WHO). We also provide mechanistic insight by identifying key toxicophores - substructural features statistically associated with high toxicity - thereby offering a structural interpretation. In sum, these elements (large and diverse data, regression modelling, WHO-based categorization, detailed fragment analysis, and AD assessment) together address the gaps of earlier studies and constitute the core novelty of our approach.

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来源期刊
CiteScore
5.20
自引率
20.00%
发文量
78
审稿时长
>24 weeks
期刊介绍: SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.
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