结合肿瘤栖息地放射组学和循环肿瘤细胞数据预测肺腺癌的高级别病理成分

IF 4.8 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Hongchang Wang , Yan Gu , Gao Wu , Yunqiang Yang , Wenhao Zhang , Guang Mu , Wentao Xue , Chenghao Fu , Yang Xia , Liang Chen , Mei Yuan , Jun Wang
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Stratified sampling ensured a consistent sample distribution between the training and testing datasets, and Borderline synthetic minority over-sampling technique (BorderlineSMOTE) addressed the data imbalance in the training dataset. Normality tests were conducted, followed by feature selection using independent sample t tests, Mann‒Whitney U tests, and Spearman rank correlation. Principal component analysis (PCA) of reduced dimensionality and model integration were performed using a stacking approach. Model predictive performance was evaluated using the area under the curve (AUC), and significant differences between models were assessed using the DeLong test.</div></div><div><h3>Results</h3><div>The combined Habitat-circulating tumor cell (CTC) model showed the best predictive performance for high-grade components in both the training and validation datasets, achieving AUCs of 0.98 [95 % CI: 0.95–1.00] and 0.91 [95 % CI: 0.82–1.00], respectively. 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引用次数: 0

摘要

目的肺癌是癌症发病率和死亡率的主要原因。早期手术切除可显著改善患者预后。研究表明肺腺癌(LUAD)的高级别成分严重影响患者的预后。因此,早期预测这些高级别部件对于临床手术决策至关重要。方法采用k均值聚类法划分肿瘤亚区,通过计算类内相关系数(ICC)排除重复性低的特征。分层抽样确保了训练数据集和测试数据集之间的样本分布一致,而Borderline合成少数过度抽样技术(BorderlineSMOTE)解决了训练数据集中的数据不平衡问题。进行正态性检验,然后使用独立样本t检验、Mann-Whitney U检验和Spearman秩相关进行特征选择。采用层叠法进行降维主成分分析和模型集成。使用曲线下面积(AUC)评估模型的预测性能,并使用DeLong检验评估模型之间的显著差异。结果生境-循环肿瘤细胞(CTC)联合模型在训练和验证数据集中对高级别成分的预测性能最好,auc分别为0.98 [95% CI: 0.95-1.00]和0.91 [95% CI: 0.82-1.00]。在训练数据集中,组合模型的AUC为0.98 [95% CI: 0.95-1.00],显著高于单个CTC模型的AUC为0.75 [95% CI: 0.64-0.85],以及单个子区域模型的AUC为0.94 [95% CI: 0.88-1.00]。决策曲线分析表明,在阈值概率为0.2-0.4时,最大净效益。在独立队列(n = 29)中,AUC达到1.00 [95% CI: 1.00 - 1.00]。结论将栖息地放射组学与ctc相关临床模型相结合,可以更精确地预测高级别病理成分,有助于临床术前决策。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Combining tumor habitat radiomics and circulating tumor cell data for predicting high-grade pathological components in lung adenocarcinoma

Objectives

Lung cancer is the leading cause of cancer incidence and mortality. Early surgical resection significantly improves patient prognosis. Studies have shown that high-grade components in lung adenocarcinoma (LUAD) severely impact patient outcomes. Therefore, early prediction of these high-grade components is crucial for clinical surgical decision-making.

Methods

We delineated tumor subregions using k-means clustering and excluded features with low reproducibility by calculating the intraclass correlation coefficient (ICC). Stratified sampling ensured a consistent sample distribution between the training and testing datasets, and Borderline synthetic minority over-sampling technique (BorderlineSMOTE) addressed the data imbalance in the training dataset. Normality tests were conducted, followed by feature selection using independent sample t tests, Mann‒Whitney U tests, and Spearman rank correlation. Principal component analysis (PCA) of reduced dimensionality and model integration were performed using a stacking approach. Model predictive performance was evaluated using the area under the curve (AUC), and significant differences between models were assessed using the DeLong test.

Results

The combined Habitat-circulating tumor cell (CTC) model showed the best predictive performance for high-grade components in both the training and validation datasets, achieving AUCs of 0.98 [95 % CI: 0.95–1.00] and 0.91 [95 % CI: 0.82–1.00], respectively. In the training dataset, the combined model's AUC of 0.98 [95 % CI: 0.95–1.00] was notably higher than that of the single CTC model, which achieved an AUC of 0.75 [95 % CI: 0.64–0.85], and the single sub-region model, which had an AUC of 0.94 [95 % CI: 0.88–1.00]. Decision-curve analysis demonstrated maximal net benefit at threshold probabilities of 0.2–0.4. In the independent cohort (n = 29), AUC reached 1.00 [95 % CI: 1.00–1.00].

Conclusion

Combining habitat radiomics and CTC-related clinical models allows for more precise prediction of high-grade pathological components, aiding in clinical preoperative decision-making.
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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