金属-卟啉与微量土臭素选择性相互作用的理论设计

IF 3.1 4区 生物学 Q2 BIOLOGY
Ali Kadhim Wadday , Sukaina Tuama Ghafel , Suraa Reaad , Mustafa M. Kadhim
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引用次数: 0

摘要

土臭素即使浓度极低,也会严重影响饮用水的味道和气味,因此去除土臭素是一项重大挑战。在这项研究中,综合计算策略包括DFT, QTAIM, NCI分析,RDG, DOS和分子动力学模拟,用于探索土臭素如何与原始Porphin及其铜协调变体相互作用。研究结果清楚地表明,铜配位显著提高土臭素的吸附。平均等压热从18.66增加到20.67 kcal/mol,能量分布变窄,表明相互作用强度更加一致。Mulliken电荷和静电电位分析表明,土臭素的羟基参与了部分电荷转移,支持了范德华和氢键相互作用起重要作用的结论。此外,铜配位显著降低了HOMO-LUMO的间隙,从0.0756 eV降低到0.00083 eV,这表明电子反应性增加,并向半金属性质转变。分子动力学模拟证实,这些框架结构和热稳定,总能量波动保持在±0.17 kcal/mol。总之,这些结果突出了铜修饰的卟啉作为一种非常有前途的吸附土臭素的平台,具有强大的热稳定性,增强的选择性和显著的电子性质调制。这种框架是下一代VOC传感器和先进水净化技术的潜在候选者。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Theoretical design of metal–porphin systems for selective interaction with trace geosmin
Geosmin, even at minuscule concentrations, can significantly compromise the taste and odor of drinking water, making its removal a critical challenge. In this study, an integrated computational strategy encompassing DFT, QTAIM, NCI analysis, RDG, DOS, and Molecular Dynamics simulations was used to probe how geosmin interacts with both pristine Porphin and its copper-coordinated variant. The findings clearly show that copper coordination markedly enhances geosmin adsorption. Specifically, the average isosteric heat increases from 18.66 to 20.67 kcal/mol, while the energy distribution narrows, suggesting more consistent interaction strength. Mulliken charge and electrostatic potential analyses indicate a partial charge transfer involving the hydroxyl group of geosmin, supporting the conclusion that van der Waals and hydrogen-bonding interactions play a significant role. Additionally, copper coordination dramatically reduces the HOMO–LUMO gap from 0.0756 eV to 0.00083 eV signaling increased electronic reactivity and a shift towards semi-metallic character. Molecular Dynamics simulations confirm that these frameworks are both structurally and thermally stable, with total energy fluctuations remaining within ±0.17 kcal/mol. Altogether, these results highlight copper-modified Porphin as a highly promising platform for geosmin adsorption, offering robust thermal stability, enhanced selectivity, and notable electronic property modulation. Such frameworks are potential candidates for next-generation VOC sensors and advanced water purification technologies.
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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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