Matilde Marradi, Martijn van Griensven, Nick R M Beijer, Jan de Boer, Aurélie Carlier
{"title":"预测移植物诱导的纤维化:巨噬细胞-成纤维细胞相互作用的标准化网络模型。","authors":"Matilde Marradi, Martijn van Griensven, Nick R M Beijer, Jan de Boer, Aurélie Carlier","doi":"10.1016/j.csbj.2025.07.022","DOIUrl":null,"url":null,"abstract":"<p><p>The foreign body response (FBR) is a complex and multifaceted process that remains incompletely understood, often leading to complications in medical device integration. In this study, we constructed a literature-based network of the FBR and developed it into a semi-quantitative predictive model to better understand its dynamics. The <i>in silico</i> FBR model incorporates key material-related factors, including immunogenic properties and mechanical mismatch, which influence immune cell activation and extracellular matrix (ECM) deposition. Predictions align with existing knowledge, showing that material stiffness and tissue progressive stiffening due to increased ECM deposition can exacerbate the FBR and that feedback interactions can protect the system from pathological outcome by gradually reducing the initial inflammatory input. The model also successfully replicated six out of eight experimental cases of anti-fibrotic interventions, demonstrating its potential as a predictive tool. Assessing implant safety in the early pre-clinical stages of device development is critical for ensuring long-term functionality and reducing adverse reactions. By systematically analyzing and integrating all interacting aspects of the FBR, <i>in silico</i> modeling can provide valuable insights and complement <i>in vitro</i> and <i>in vivo</i> studies for improved implant safety assessment.</p>","PeriodicalId":10715,"journal":{"name":"Computational and structural biotechnology journal","volume":"27 ","pages":"3251-3263"},"PeriodicalIF":4.1000,"publicationDate":"2025-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12312070/pdf/","citationCount":"0","resultStr":"{\"title\":\"Towards predicting implant-induced fibrosis: A standardized network model of macrophage-fibroblast interactions.\",\"authors\":\"Matilde Marradi, Martijn van Griensven, Nick R M Beijer, Jan de Boer, Aurélie Carlier\",\"doi\":\"10.1016/j.csbj.2025.07.022\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The foreign body response (FBR) is a complex and multifaceted process that remains incompletely understood, often leading to complications in medical device integration. In this study, we constructed a literature-based network of the FBR and developed it into a semi-quantitative predictive model to better understand its dynamics. The <i>in silico</i> FBR model incorporates key material-related factors, including immunogenic properties and mechanical mismatch, which influence immune cell activation and extracellular matrix (ECM) deposition. Predictions align with existing knowledge, showing that material stiffness and tissue progressive stiffening due to increased ECM deposition can exacerbate the FBR and that feedback interactions can protect the system from pathological outcome by gradually reducing the initial inflammatory input. The model also successfully replicated six out of eight experimental cases of anti-fibrotic interventions, demonstrating its potential as a predictive tool. Assessing implant safety in the early pre-clinical stages of device development is critical for ensuring long-term functionality and reducing adverse reactions. By systematically analyzing and integrating all interacting aspects of the FBR, <i>in silico</i> modeling can provide valuable insights and complement <i>in vitro</i> and <i>in vivo</i> studies for improved implant safety assessment.</p>\",\"PeriodicalId\":10715,\"journal\":{\"name\":\"Computational and structural biotechnology journal\",\"volume\":\"27 \",\"pages\":\"3251-3263\"},\"PeriodicalIF\":4.1000,\"publicationDate\":\"2025-07-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12312070/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and structural biotechnology journal\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1016/j.csbj.2025.07.022\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and structural biotechnology journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.csbj.2025.07.022","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Towards predicting implant-induced fibrosis: A standardized network model of macrophage-fibroblast interactions.
The foreign body response (FBR) is a complex and multifaceted process that remains incompletely understood, often leading to complications in medical device integration. In this study, we constructed a literature-based network of the FBR and developed it into a semi-quantitative predictive model to better understand its dynamics. The in silico FBR model incorporates key material-related factors, including immunogenic properties and mechanical mismatch, which influence immune cell activation and extracellular matrix (ECM) deposition. Predictions align with existing knowledge, showing that material stiffness and tissue progressive stiffening due to increased ECM deposition can exacerbate the FBR and that feedback interactions can protect the system from pathological outcome by gradually reducing the initial inflammatory input. The model also successfully replicated six out of eight experimental cases of anti-fibrotic interventions, demonstrating its potential as a predictive tool. Assessing implant safety in the early pre-clinical stages of device development is critical for ensuring long-term functionality and reducing adverse reactions. By systematically analyzing and integrating all interacting aspects of the FBR, in silico modeling can provide valuable insights and complement in vitro and in vivo studies for improved implant safety assessment.
期刊介绍:
Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to:
Structure and function of proteins, nucleic acids and other macromolecules
Structure and function of multi-component complexes
Protein folding, processing and degradation
Enzymology
Computational and structural studies of plant systems
Microbial Informatics
Genomics
Proteomics
Metabolomics
Algorithms and Hypothesis in Bioinformatics
Mathematical and Theoretical Biology
Computational Chemistry and Drug Discovery
Microscopy and Molecular Imaging
Nanotechnology
Systems and Synthetic Biology