证明保守极性信号通道在μ-阿片受体激活机制中的作用。

IF 4.1 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Computational and structural biotechnology journal Pub Date : 2025-07-16 eCollection Date: 2025-01-01 DOI:10.1016/j.csbj.2025.07.014
Arijit Sarkar, Szabolcs Dvorácskó, Zoltán Lipinszki, Argha Mitra, Mária Harmati, Krisztina Buzás, Attila Borics
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引用次数: 0

摘要

G蛋白偶联受体的活性通常与结构和功能状态的动态相互转换有关,激活过程被认为是由跨膜结构域中的构象开关的互连网络控制的。然而,不同功能作用程度的配体是如何发挥作用的,目前还不清楚。根据我们最近的假设,外部刺激的传递伴随着宏观极化在跨膜域的转移,由保守的极性氨基酸的协调运动和极性物种的重排提供。在此之前,我们通过分子动力学模拟研究了μ-阿片受体、β2-肾上腺素受体和1型大麻素受体。结果揭示了三种a类受体中连接正交结合袋和胞内G蛋白结合表面的极性信号通道的相关动力学。在本研究中,通过μ-阿片受体通道残基的系统性突变,证明了该极性信号通道在激活机制中的相互作用。利用分子动力学模拟分析突变受体,并通过放射配体受体结合和G蛋白刺激测定在体外进行表征。除了一个例外,所有突变体都不能结合内源性激动剂内啡肽-2并刺激Gi蛋白复合物。此外,突变结果证实了结合袋与细胞内表面之间的变构连接。发现结合激动剂的强关联和最佳生物活性取向对于相关运动的启动和随之而来的信号传导至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evidencing the role of a conserved polar signaling channel in the activation mechanism of the μ-opioid receptor.

The activity of G protein-coupled receptors has been generally linked to dynamically interconverting structural and functional states and the process of activation was proposed to be controlled by an interconnecting network of conformational switches in the transmembrane domain. However, it is yet to be uncovered how ligands with different extent of functional effect exert their actions. According to our recent hypothesis, the transmission of the external stimulus is accompanied by the shift of macroscopic polarization in the transmembrane domain, furnished by concerted movements of conserved polar amino acids and the rearrangement of polar species. Previously, we have examined the μ-opioid, β2-adrenergic and type 1 cannabinoid receptors by performing molecular dynamics simulations. Results revealed correlated dynamics of a polar signaling channel connecting the orthosteric binding pocket and the intracellular G protein-binding surface in all three class A receptors. In the present study, the interplay of this polar signaling channel in the activation mechanism was evidenced by systematic mutation of the channel residues of the μ-opioid receptor. Mutant receptors were analyzed utilizing molecular dynamics simulations and characterized in vitro by means of radioligand receptor binding and G protein stimulation assays. Apart from one exception, all mutants failed to bind the endogenous agonist endomorphin-2 and to stimulate the Gi protein complex. Furthermore, mutation results confirmed allosteric connection between the binding pocket and the intracellular surface. The strong association and optimal bioactive orientation of the bound agonist was found to be crucial for the initiation of correlated motions and consequent signaling.

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来源期刊
Computational and structural biotechnology journal
Computational and structural biotechnology journal Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
9.30
自引率
3.30%
发文量
540
审稿时长
6 weeks
期刊介绍: Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to: Structure and function of proteins, nucleic acids and other macromolecules Structure and function of multi-component complexes Protein folding, processing and degradation Enzymology Computational and structural studies of plant systems Microbial Informatics Genomics Proteomics Metabolomics Algorithms and Hypothesis in Bioinformatics Mathematical and Theoretical Biology Computational Chemistry and Drug Discovery Microscopy and Molecular Imaging Nanotechnology Systems and Synthetic Biology
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