多维Ligusticum multivitatum (Apiaceae, apio总科)的系统发育分析和质体组比较。

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY
Genes Pub Date : 2025-07-14 DOI:10.3390/genes16070823
Changkun Liu, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun, Zhenji Wang
{"title":"多维Ligusticum multivitatum (Apiaceae, apio总科)的系统发育分析和质体组比较。","authors":"Changkun Liu, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun, Zhenji Wang","doi":"10.3390/genes16070823","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong><i>Ligusticum</i> L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of <i>Ligusticum multivittatum</i> Franch. is the most prominent, which has not been sufficiently resolved so far.</p><p><strong>Methods: </strong>to clarify the taxonomic position of <i>Ligusticum multivittatum</i>, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between <i>Ligusticum multivittatum</i> and fifteen <i>Ligusticopsis</i> species.</p><p><strong>Results: </strong>Both analyses robustly supported that <i>Ligusticum multivittatum</i> nested in genus <i>Ligusticopsis</i> Leute and formed a clade with fifteen <i>Ligusticopsis</i> species, belonged to the Selineae tribe, which was distant from the type species of <i>Ligusticum</i> (<i>Ligusticum scoticum</i>), located in the <i>Acronema</i> clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that <i>Ligusticum multivittatum</i> is a member of <i>Ligusticopsis</i>, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that <i>Ligusticum multivittatum</i> indeed belonged to <i>Ligusticopsis</i> and transformed it into <i>Ligusticopsis</i> conducted by Pimenov was reasonable.</p><p><strong>Conclusions: </strong>Our study not only confirms the classification of <i>Ligusticum multivittatum</i> by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa.</p>","PeriodicalId":12688,"journal":{"name":"Genes","volume":"16 7","pages":""},"PeriodicalIF":2.8000,"publicationDate":"2025-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12294495/pdf/","citationCount":"0","resultStr":"{\"title\":\"Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of <i>Ligusticum multivittatum</i> (Apiaceae, Apioideae).\",\"authors\":\"Changkun Liu, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun, Zhenji Wang\",\"doi\":\"10.3390/genes16070823\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong><i>Ligusticum</i> L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of <i>Ligusticum multivittatum</i> Franch. is the most prominent, which has not been sufficiently resolved so far.</p><p><strong>Methods: </strong>to clarify the taxonomic position of <i>Ligusticum multivittatum</i>, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between <i>Ligusticum multivittatum</i> and fifteen <i>Ligusticopsis</i> species.</p><p><strong>Results: </strong>Both analyses robustly supported that <i>Ligusticum multivittatum</i> nested in genus <i>Ligusticopsis</i> Leute and formed a clade with fifteen <i>Ligusticopsis</i> species, belonged to the Selineae tribe, which was distant from the type species of <i>Ligusticum</i> (<i>Ligusticum scoticum</i>), located in the <i>Acronema</i> clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that <i>Ligusticum multivittatum</i> is a member of <i>Ligusticopsis</i>, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that <i>Ligusticum multivittatum</i> indeed belonged to <i>Ligusticopsis</i> and transformed it into <i>Ligusticopsis</i> conducted by Pimenov was reasonable.</p><p><strong>Conclusions: </strong>Our study not only confirms the classification of <i>Ligusticum multivittatum</i> by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa.</p>\",\"PeriodicalId\":12688,\"journal\":{\"name\":\"Genes\",\"volume\":\"16 7\",\"pages\":\"\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-07-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12294495/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genes\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3390/genes16070823\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genes","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/genes16070823","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

摘要

背景:Ligusticum L.植物在叶、花、小苞片和分生皮等方面具有显著的形态差异,因此该属成员的分类一直存在争议。其中,多维Ligusticum multivitatum Franch的分类问题。是最突出的问题,到目前为止还没有得到充分解决。方法:利用多维Ligusticum multivitatum质体组数据和ITS序列进行系统发育分析,明确其分类位置。同时,我们对多维Ligusticum multivitatum与15种Ligusticopsis进行了全面的质体组对比分析。结果:两种分析均有力地支持了Ligusticum multivittatum巢居在Ligusticopsis Leute属中,与15个Ligusticopsis种形成一个分支,属于Selineae tribe,与Ligusticum的模式种Ligusticum scoticum在Acronema分支中的距离较远。结果表明,16个质体在基因组结构、大小、基因含量和排列、密码子偏倚、SSRs和SC/IR等方面具有高度的相似性和保守性。这些发现表明,多维Ligusticum是Ligusticopsis的一个成员,进一步证实了它们共同的形态特征:茎基部被纤维残鞘覆盖,花瓣白色,羽状小苞片,背向压缩的分果具略突出的背肋,有翅的侧肋,在连合处和每条沟中有大量的vita。因此,结合系统发育分析、质体比较和形态特征等证据,我们确认Ligusticum multivitatum确实属于Ligusticopsis, Pimenov将其转化为Ligusticopsis是合理的。结论:本研究不仅通过综合证据确认了多维女贞子的分类,而且为解决争议分类群的分类问题提供了参考。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae).

Background: Ligusticum L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of Ligusticum multivittatum Franch. is the most prominent, which has not been sufficiently resolved so far.

Methods: to clarify the taxonomic position of Ligusticum multivittatum, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between Ligusticum multivittatum and fifteen Ligusticopsis species.

Results: Both analyses robustly supported that Ligusticum multivittatum nested in genus Ligusticopsis Leute and formed a clade with fifteen Ligusticopsis species, belonged to the Selineae tribe, which was distant from the type species of Ligusticum (Ligusticum scoticum), located in the Acronema clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that Ligusticum multivittatum is a member of Ligusticopsis, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that Ligusticum multivittatum indeed belonged to Ligusticopsis and transformed it into Ligusticopsis conducted by Pimenov was reasonable.

Conclusions: Our study not only confirms the classification of Ligusticum multivittatum by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Genes
Genes GENETICS & HEREDITY-
CiteScore
5.20
自引率
5.70%
发文量
1975
审稿时长
22.94 days
期刊介绍: Genes (ISSN 2073-4425) is an international, peer-reviewed open access journal which provides an advanced forum for studies related to genes, genetics and genomics. It publishes reviews, research articles, communications and technical notes. There is no restriction on the length of the papers and we encourage scientists to publish their results in as much detail as possible.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信