{"title":"多维Ligusticum multivitatum (Apiaceae, apio总科)的系统发育分析和质体组比较。","authors":"Changkun Liu, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun, Zhenji Wang","doi":"10.3390/genes16070823","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong><i>Ligusticum</i> L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of <i>Ligusticum multivittatum</i> Franch. is the most prominent, which has not been sufficiently resolved so far.</p><p><strong>Methods: </strong>to clarify the taxonomic position of <i>Ligusticum multivittatum</i>, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between <i>Ligusticum multivittatum</i> and fifteen <i>Ligusticopsis</i> species.</p><p><strong>Results: </strong>Both analyses robustly supported that <i>Ligusticum multivittatum</i> nested in genus <i>Ligusticopsis</i> Leute and formed a clade with fifteen <i>Ligusticopsis</i> species, belonged to the Selineae tribe, which was distant from the type species of <i>Ligusticum</i> (<i>Ligusticum scoticum</i>), located in the <i>Acronema</i> clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that <i>Ligusticum multivittatum</i> is a member of <i>Ligusticopsis</i>, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that <i>Ligusticum multivittatum</i> indeed belonged to <i>Ligusticopsis</i> and transformed it into <i>Ligusticopsis</i> conducted by Pimenov was reasonable.</p><p><strong>Conclusions: </strong>Our study not only confirms the classification of <i>Ligusticum multivittatum</i> by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa.</p>","PeriodicalId":12688,"journal":{"name":"Genes","volume":"16 7","pages":""},"PeriodicalIF":2.8000,"publicationDate":"2025-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12294495/pdf/","citationCount":"0","resultStr":"{\"title\":\"Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of <i>Ligusticum multivittatum</i> (Apiaceae, Apioideae).\",\"authors\":\"Changkun Liu, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun, Zhenji Wang\",\"doi\":\"10.3390/genes16070823\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong><i>Ligusticum</i> L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of <i>Ligusticum multivittatum</i> Franch. is the most prominent, which has not been sufficiently resolved so far.</p><p><strong>Methods: </strong>to clarify the taxonomic position of <i>Ligusticum multivittatum</i>, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between <i>Ligusticum multivittatum</i> and fifteen <i>Ligusticopsis</i> species.</p><p><strong>Results: </strong>Both analyses robustly supported that <i>Ligusticum multivittatum</i> nested in genus <i>Ligusticopsis</i> Leute and formed a clade with fifteen <i>Ligusticopsis</i> species, belonged to the Selineae tribe, which was distant from the type species of <i>Ligusticum</i> (<i>Ligusticum scoticum</i>), located in the <i>Acronema</i> clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that <i>Ligusticum multivittatum</i> is a member of <i>Ligusticopsis</i>, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that <i>Ligusticum multivittatum</i> indeed belonged to <i>Ligusticopsis</i> and transformed it into <i>Ligusticopsis</i> conducted by Pimenov was reasonable.</p><p><strong>Conclusions: </strong>Our study not only confirms the classification of <i>Ligusticum multivittatum</i> by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa.</p>\",\"PeriodicalId\":12688,\"journal\":{\"name\":\"Genes\",\"volume\":\"16 7\",\"pages\":\"\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-07-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12294495/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genes\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3390/genes16070823\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genes","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/genes16070823","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae).
Background: Ligusticum L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of Ligusticum multivittatum Franch. is the most prominent, which has not been sufficiently resolved so far.
Methods: to clarify the taxonomic position of Ligusticum multivittatum, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between Ligusticum multivittatum and fifteen Ligusticopsis species.
Results: Both analyses robustly supported that Ligusticum multivittatum nested in genus Ligusticopsis Leute and formed a clade with fifteen Ligusticopsis species, belonged to the Selineae tribe, which was distant from the type species of Ligusticum (Ligusticum scoticum), located in the Acronema clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that Ligusticum multivittatum is a member of Ligusticopsis, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that Ligusticum multivittatum indeed belonged to Ligusticopsis and transformed it into Ligusticopsis conducted by Pimenov was reasonable.
Conclusions: Our study not only confirms the classification of Ligusticum multivittatum by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa.
期刊介绍:
Genes (ISSN 2073-4425) is an international, peer-reviewed open access journal which provides an advanced forum for studies related to genes, genetics and genomics. It publishes reviews, research articles, communications and technical notes. There is no restriction on the length of the papers and we encourage scientists to publish their results in as much detail as possible.