相关生存数据的快速变分贝叶斯推断:在有创机械通气持续时间分析中的应用。

IF 1.8 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Chengqian Xian, Camila P E de Souza, Wenqing He, Felipe F Rodrigues, Renfang Tian
{"title":"相关生存数据的快速变分贝叶斯推断:在有创机械通气持续时间分析中的应用。","authors":"Chengqian Xian, Camila P E de Souza, Wenqing He, Felipe F Rodrigues, Renfang Tian","doi":"10.1002/sim.70198","DOIUrl":null,"url":null,"abstract":"<p><p>Correlated survival data are prevalent in various clinical settings and have been extensively discussed in the literature. A common example is clustered survival data, where survival times are associated due to shared characteristics within clusters. In our study, we analyze invasive mechanical ventilation data collected from multiple intensive care units (ICUs) across Ontario, Canada. Patients within the same ICU exhibit similarities in clinical profiles and mechanical ventilation settings, leading to a correlation in their ventilation durations. To address this association, we introduce a shared frailty log-logistic accelerated failure time model that accounts for intra-cluster correlation through a cluster-specific random intercept. We present a novel, fast variational Bayes (VB) algorithm for parameter inference and evaluate its performance using simulation studies varying the number of clusters and their sizes. We further compare the performance of our proposed VB algorithm with the h-likelihood method and a Markov Chain Monte Carlo (MCMC) algorithm. The proposed algorithm delivers satisfactory results and demonstrates computational efficiency over the MCMC algorithm. We apply our method to ICU ventilation data from Ontario to investigate the ICU-site random effect on ventilation duration.</p>","PeriodicalId":21879,"journal":{"name":"Statistics in Medicine","volume":"44 15-17","pages":"e70198"},"PeriodicalIF":1.8000,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12290274/pdf/","citationCount":"0","resultStr":"{\"title\":\"Fast Variational Bayesian Inference for Correlated Survival Data: An Application to Invasive Mechanical Ventilation Duration Analysis.\",\"authors\":\"Chengqian Xian, Camila P E de Souza, Wenqing He, Felipe F Rodrigues, Renfang Tian\",\"doi\":\"10.1002/sim.70198\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Correlated survival data are prevalent in various clinical settings and have been extensively discussed in the literature. A common example is clustered survival data, where survival times are associated due to shared characteristics within clusters. In our study, we analyze invasive mechanical ventilation data collected from multiple intensive care units (ICUs) across Ontario, Canada. Patients within the same ICU exhibit similarities in clinical profiles and mechanical ventilation settings, leading to a correlation in their ventilation durations. To address this association, we introduce a shared frailty log-logistic accelerated failure time model that accounts for intra-cluster correlation through a cluster-specific random intercept. We present a novel, fast variational Bayes (VB) algorithm for parameter inference and evaluate its performance using simulation studies varying the number of clusters and their sizes. We further compare the performance of our proposed VB algorithm with the h-likelihood method and a Markov Chain Monte Carlo (MCMC) algorithm. The proposed algorithm delivers satisfactory results and demonstrates computational efficiency over the MCMC algorithm. We apply our method to ICU ventilation data from Ontario to investigate the ICU-site random effect on ventilation duration.</p>\",\"PeriodicalId\":21879,\"journal\":{\"name\":\"Statistics in Medicine\",\"volume\":\"44 15-17\",\"pages\":\"e70198\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2025-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12290274/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Statistics in Medicine\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1002/sim.70198\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Statistics in Medicine","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1002/sim.70198","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

相关生存数据在各种临床环境中普遍存在,并在文献中得到了广泛的讨论。一个常见的例子是集群生存数据,其中生存时间由于集群内的共享特征而相关联。在我们的研究中,我们分析了从加拿大安大略省多个重症监护病房(icu)收集的有创机械通气数据。同一ICU内的患者在临床概况和机械通气设置方面表现出相似性,导致其通气持续时间存在相关性。为了解决这种关联,我们引入了一个共享脆弱性逻辑-逻辑加速故障时间模型,该模型通过特定于集群的随机截取来解释集群内的相关性。我们提出了一种新的、快速的变分贝叶斯(VB)算法用于参数推理,并通过模拟研究来评估其性能。我们进一步比较了我们提出的VB算法与h-似然方法和马尔可夫链蒙特卡罗(MCMC)算法的性能。该算法取得了令人满意的结果,并证明了其计算效率高于MCMC算法。我们将该方法应用于安大略省ICU通气数据,以研究ICU位置对通气时间的随机效应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Fast Variational Bayesian Inference for Correlated Survival Data: An Application to Invasive Mechanical Ventilation Duration Analysis.

Correlated survival data are prevalent in various clinical settings and have been extensively discussed in the literature. A common example is clustered survival data, where survival times are associated due to shared characteristics within clusters. In our study, we analyze invasive mechanical ventilation data collected from multiple intensive care units (ICUs) across Ontario, Canada. Patients within the same ICU exhibit similarities in clinical profiles and mechanical ventilation settings, leading to a correlation in their ventilation durations. To address this association, we introduce a shared frailty log-logistic accelerated failure time model that accounts for intra-cluster correlation through a cluster-specific random intercept. We present a novel, fast variational Bayes (VB) algorithm for parameter inference and evaluate its performance using simulation studies varying the number of clusters and their sizes. We further compare the performance of our proposed VB algorithm with the h-likelihood method and a Markov Chain Monte Carlo (MCMC) algorithm. The proposed algorithm delivers satisfactory results and demonstrates computational efficiency over the MCMC algorithm. We apply our method to ICU ventilation data from Ontario to investigate the ICU-site random effect on ventilation duration.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Statistics in Medicine
Statistics in Medicine 医学-公共卫生、环境卫生与职业卫生
CiteScore
3.40
自引率
10.00%
发文量
334
审稿时长
2-4 weeks
期刊介绍: The journal aims to influence practice in medicine and its associated sciences through the publication of papers on statistical and other quantitative methods. Papers will explain new methods and demonstrate their application, preferably through a substantive, real, motivating example or a comprehensive evaluation based on an illustrative example. Alternatively, papers will report on case-studies where creative use or technical generalizations of established methodology is directed towards a substantive application. Reviews of, and tutorials on, general topics relevant to the application of statistics to medicine will also be published. The main criteria for publication are appropriateness of the statistical methods to a particular medical problem and clarity of exposition. Papers with primarily mathematical content will be excluded. The journal aims to enhance communication between statisticians, clinicians and medical researchers.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信