寻找小窝蛋白8S复合物的膜结合结构。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
Sayyid Yobhel Vasquez Rodriguez,  and , Themis Lazaridis*, 
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引用次数: 0

摘要

小泡蛋白-1 (CAV1)在质膜中形成小泡、杯状内陷的过程中起着至关重要的作用,但其作用机制尚不清楚。最近的低温电镜结构显示,11-mer的CAV1 (8S复合物)形成了一个平面膜表面的圆盘,这就提出了平面复合物如何产生膜曲率的问题。我们之前进行了隐式溶剂分子动力学模拟,结果表明8S配合物呈圆锥形,其外脊深入隐式膜内。这些结果表明,8S配合物产生曲率的机制是支架式的。在这项工作中,我们旨在通过全原子模拟来验证这一提议。到目前为止,所有的模拟(除了在真空中)都显示这个复合体呈锥形。复合物周围脂质的排列取决于初始构型。从双分子层的顶部开始,脂质被提取,水分子被困在8S复合物和双分子层之间,在远端小叶上形成一个突起。从双层内部深处开始,置换近端小叶导致远端小叶脂质吸附在8S凹表面上的更合理的结构。需要进一步的工作来表征8S形状的决定因素及其膜曲率的产生能力以及脂质组成的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Seeking the Membrane-Bound Structure of the Caveolin 8S Complex

The protein caveolin-1 (CAV1) is essential in the generation of caveolae, cup-like invaginations in the plasma membrane, but the mechanism of its action remains unclear. A recent cryo-EM structure showed an 11-mer of CAV1 (the 8S complex) forming a disk with a flat membrane-facing surface, raising the question of how a flat complex can generate membrane curvature. We previously conducted implicit-solvent molecular dynamics simulations, which showed the 8S complex adopting a conical shape with its outer ridge deep inside the implicit membrane. These results suggested a scaffolding-type mechanism for the generation of curvature by the 8S complex. In this work, we aimed to validate this proposal via all-atom simulations. To date, all simulations (other than in a vacuum) show the complex taking a conical shape. The arrangement of the lipids around the complex depends on the starting configuration. Starting on top of the bilayer leads to lipid extraction and trapped water molecules between the 8S complex and the bilayer, creating a protrusion on the distal leaflet. Starting deep inside the bilayer, displacing the proximal leaflet leads to a more plausible configuration with the distal leaflet lipids adsorbed onto the 8S concave surface. Further work is needed to characterize the determinants of 8S shape and its membrane curvature generating capabilities as well as the role of lipid composition.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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