使用临床文本解释来自儿科风险预测模型的警报。

IF 4.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Samuel Nycklemoe, Sriharsha Devarapu, Yanjun Gao, Kyle Carey, Nicholas Kuehnel, Neil Munjal, Priti Jani, Matthew Churpek, Dmitriy Dligach, Majid Afshar, Anoop Mayampurath
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引用次数: 0

摘要

目的:在医院应用风险预测模型识别有临床恶化风险的儿科患者,以便及时干预和抢救。本研究的目的是开发一种新的解释器算法,该算法使用患者的临床记录为风险预测警报生成基于文本的解释。材料和方法:我们对2009-2020年在威斯康星大学麦迪逊分校美国家庭儿童医院住院的39406名患者进行了回顾性研究。使用儿科风险评估和分诊(pCART)验证的风险预测模型来识别有恶化风险的儿童。一个变压器模型经过训练,可以使用每次pCART评分前12小时的临床记录来预测患者是否被标记为有风险。然后,标签感知注意力突出了对危险警报最重要的文本短语。研究队列随机分为推导(60%)和验证(20%)数据,并使用单独的测试(20%)来评估解释者的表现。结果:我们的pCART解释器算法在区分有风险的pCART警报和无警报方面表现良好(c-统计量为0.805)。来自pCART解释器的样本解释揭示了临床上重要的短语,如“呼吸急促”、“跌倒风险”、“膨胀”和“咕噜声”,从而展示了出色的面部有效性。讨论:pCART解释器可以通过注意笔记中的关键短语来快速引导临床医生了解患者的病情,潜在地增强态势感知并指导决策。结论:我们开发了pCART解释器,这是一种新颖的算法,它突出显示临床记录中的文本,以提供有关恶化警报的医学相关背景,从而提高了pCART模型的可解释性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Explaining alerts from a pediatric risk prediction model using clinical text.

Objective: Risk prediction models are used in hospitals to identify pediatric patients at risk of clinical deterioration, enabling timely interventions and rescue. The objective of this study was to develop a new explainer algorithm that uses a patient's clinical notes to generate text-based explanations for risk prediction alerts.

Materials and methods: We conducted a retrospective study of 39 406 patient admissions to the American Family Children's Hospital at the University of Wisconsin-Madison (2009-2020). The pediatric Calculated Assessment of Risk and Triage (pCART) validated risk prediction model was used to identify children at risk for deterioration. A transformer model was trained to use clinical notes from the 12-hour period preceding each pCART score to predict whether a patient was flagged as at risk. Then, label-aware attention highlighted text phrases most important to an at-risk alert. The study cohort was randomly split into derivation (60%) and validation (20%) data, and a separate test (20%) was used to evaluate the explainer's performance.

Results: Our pCART Explainer algorithm performed well in discriminating at-risk pCART alert vs no alert (c-statistic 0.805). Sample explanations from pCART Explainer revealed clinically important phrases such as "rapid breathing," "fall risk," "distension," and "grunting," thereby demonstrating excellent face validity.

Discussion: The pCART Explainer could quickly orient clinicians to the patient's condition by drawing attention to key phrases in notes, potentially enhancing situational awareness and guiding decision-making.

Conclusion: We developed pCART Explainer, a novel algorithm that highlights text within clinical notes to provide medically relevant context about deterioration alerts, thereby improving the explainability of the pCART model.

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来源期刊
Journal of the American Medical Informatics Association
Journal of the American Medical Informatics Association 医学-计算机:跨学科应用
CiteScore
14.50
自引率
7.80%
发文量
230
审稿时长
3-8 weeks
期刊介绍: JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.
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