{"title":"IntelliCircos:一个数据驱动和人工智能驱动的Circos情节创作工具","authors":"Mingyang Gu, Jiamin Zhu, Qipeng Wang, Fengjie Wang, Xiaolin Wen, Yong Wang, Min Zhu","doi":"10.1111/cgf.70118","DOIUrl":null,"url":null,"abstract":"<p>Genomics data is essential in biological and medical domains, and bioinformatics analysts often manually create circos plots to analyze the data and extract valuable insights. However, creating circos plots is complex, as it requires careful design for multiple track attributes and positional relationships between them. Typically, analysts often seek inspiration from existing circos plots, and they have to iteratively adjust and refine the plot to achieve a satisfactory final design, making the process both tedious and time-intensive. To address these challenges, we propose IntelliCircos, an AI-powered interactive authoring tool that streamlines the process from initial visual design to the final implementation of circos plots. Specifically, we build a new dataset containing 4396 circos plots with corresponding annotations and configurations, which are extracted and labeled from published papers. With the dataset, we further identify track combination patterns, and utilize Large Language Model (LLM) to provide domain-specific design recommendations and configuration references to navigate the design of circos plots. We conduct a user study with 8 bioinformatics analysts to evaluate IntelliCircos, and the results demonstrate its usability and effectiveness in authoring circos plots.</p>","PeriodicalId":10687,"journal":{"name":"Computer Graphics Forum","volume":"44 3","pages":""},"PeriodicalIF":2.9000,"publicationDate":"2025-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"IntelliCircos: A Data-driven and AI-powered Authoring Tool for Circos Plots\",\"authors\":\"Mingyang Gu, Jiamin Zhu, Qipeng Wang, Fengjie Wang, Xiaolin Wen, Yong Wang, Min Zhu\",\"doi\":\"10.1111/cgf.70118\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Genomics data is essential in biological and medical domains, and bioinformatics analysts often manually create circos plots to analyze the data and extract valuable insights. However, creating circos plots is complex, as it requires careful design for multiple track attributes and positional relationships between them. Typically, analysts often seek inspiration from existing circos plots, and they have to iteratively adjust and refine the plot to achieve a satisfactory final design, making the process both tedious and time-intensive. To address these challenges, we propose IntelliCircos, an AI-powered interactive authoring tool that streamlines the process from initial visual design to the final implementation of circos plots. Specifically, we build a new dataset containing 4396 circos plots with corresponding annotations and configurations, which are extracted and labeled from published papers. With the dataset, we further identify track combination patterns, and utilize Large Language Model (LLM) to provide domain-specific design recommendations and configuration references to navigate the design of circos plots. We conduct a user study with 8 bioinformatics analysts to evaluate IntelliCircos, and the results demonstrate its usability and effectiveness in authoring circos plots.</p>\",\"PeriodicalId\":10687,\"journal\":{\"name\":\"Computer Graphics Forum\",\"volume\":\"44 3\",\"pages\":\"\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2025-05-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer Graphics Forum\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/cgf.70118\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, SOFTWARE ENGINEERING\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Graphics Forum","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/cgf.70118","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}
IntelliCircos: A Data-driven and AI-powered Authoring Tool for Circos Plots
Genomics data is essential in biological and medical domains, and bioinformatics analysts often manually create circos plots to analyze the data and extract valuable insights. However, creating circos plots is complex, as it requires careful design for multiple track attributes and positional relationships between them. Typically, analysts often seek inspiration from existing circos plots, and they have to iteratively adjust and refine the plot to achieve a satisfactory final design, making the process both tedious and time-intensive. To address these challenges, we propose IntelliCircos, an AI-powered interactive authoring tool that streamlines the process from initial visual design to the final implementation of circos plots. Specifically, we build a new dataset containing 4396 circos plots with corresponding annotations and configurations, which are extracted and labeled from published papers. With the dataset, we further identify track combination patterns, and utilize Large Language Model (LLM) to provide domain-specific design recommendations and configuration references to navigate the design of circos plots. We conduct a user study with 8 bioinformatics analysts to evaluate IntelliCircos, and the results demonstrate its usability and effectiveness in authoring circos plots.
期刊介绍:
Computer Graphics Forum is the official journal of Eurographics, published in cooperation with Wiley-Blackwell, and is a unique, international source of information for computer graphics professionals interested in graphics developments worldwide. It is now one of the leading journals for researchers, developers and users of computer graphics in both commercial and academic environments. The journal reports on the latest developments in the field throughout the world and covers all aspects of the theory, practice and application of computer graphics.