IntelliCircos:一个数据驱动和人工智能驱动的Circos情节创作工具

IF 2.9 4区 计算机科学 Q2 COMPUTER SCIENCE, SOFTWARE ENGINEERING
Mingyang Gu, Jiamin Zhu, Qipeng Wang, Fengjie Wang, Xiaolin Wen, Yong Wang, Min Zhu
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引用次数: 0

摘要

基因组学数据在生物和医学领域是必不可少的,生物信息学分析师经常手动创建circos图来分析数据并提取有价值的见解。然而,创建circos情节是复杂的,因为它需要仔细设计多个轨道属性和它们之间的位置关系。通常情况下,分析师经常从现有的circos情节中寻找灵感,他们必须反复调整和完善情节,以达到令人满意的最终设计,这使得这个过程既繁琐又耗时。为了应对这些挑战,我们提出了IntelliCircos,这是一种基于人工智能的交互式创作工具,它简化了从最初的视觉设计到circos情节的最终实现的过程。具体来说,我们构建了一个包含4396个circos图的新数据集,这些图具有相应的注释和配置,这些图是从已发表的论文中提取和标记的。利用该数据集,我们进一步识别轨道组合模式,并利用大型语言模型(LLM)提供特定领域的设计建议和配置参考,以导航circos图的设计。我们与8位生物信息学分析师进行了一项用户研究,以评估IntelliCircos,结果证明了它在创作circos图方面的可用性和有效性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
IntelliCircos: A Data-driven and AI-powered Authoring Tool for Circos Plots

Genomics data is essential in biological and medical domains, and bioinformatics analysts often manually create circos plots to analyze the data and extract valuable insights. However, creating circos plots is complex, as it requires careful design for multiple track attributes and positional relationships between them. Typically, analysts often seek inspiration from existing circos plots, and they have to iteratively adjust and refine the plot to achieve a satisfactory final design, making the process both tedious and time-intensive. To address these challenges, we propose IntelliCircos, an AI-powered interactive authoring tool that streamlines the process from initial visual design to the final implementation of circos plots. Specifically, we build a new dataset containing 4396 circos plots with corresponding annotations and configurations, which are extracted and labeled from published papers. With the dataset, we further identify track combination patterns, and utilize Large Language Model (LLM) to provide domain-specific design recommendations and configuration references to navigate the design of circos plots. We conduct a user study with 8 bioinformatics analysts to evaluate IntelliCircos, and the results demonstrate its usability and effectiveness in authoring circos plots.

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来源期刊
Computer Graphics Forum
Computer Graphics Forum 工程技术-计算机:软件工程
CiteScore
5.80
自引率
12.00%
发文量
175
审稿时长
3-6 weeks
期刊介绍: Computer Graphics Forum is the official journal of Eurographics, published in cooperation with Wiley-Blackwell, and is a unique, international source of information for computer graphics professionals interested in graphics developments worldwide. It is now one of the leading journals for researchers, developers and users of computer graphics in both commercial and academic environments. The journal reports on the latest developments in the field throughout the world and covers all aspects of the theory, practice and application of computer graphics.
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