肠道微生物群通过细胞外基质蛋白介导壶腹周围癌:一项因果关系研究

IF 1.9 4区 生物学 Q4 CELL BIOLOGY
Zeying Cheng, Liqian Du, Hongxia Zhang, Zhongkun Zhou, Yunhao Ma, Baizhuo Zhang, Lixue Tu, Tong Gong, Zhenzhen Si, Hong Fang, Jianfang Zhao, Peng Chen
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引用次数: 0

摘要

最近的研究报道,肠道微生物群可能在消化系统癌症的发生和发展中发挥作用。壶腹周围癌是一种较为罕见的消化系统肿瘤,缺乏有效的靶向治疗和特异性药物。本研究的目的是阐明壶腹周围癌与肠道菌群的关系。本研究收集了211个肠道微生物分类群和三种壶腹周围癌相关癌症的公共全基因组关联研究(GWAS)数据,并将其用于双样本孟德尔随机化(MR)分析。在分析壶腹周围癌与邻近正常组织差异表达基因的基础上,选择细胞外基质蛋白进行进一步的多变量MR分析。最后,使用连接图筛选壶腹周围癌的潜在治疗药物。两份样本的MR结果证实9个微生物类群Tyzzerella、Alloprevotella、Holdemania、LachnospiraceaeUCG010、Terrisporobacter、Alistipes、Rikenellaceae、Anaerofilum和Dialister与壶腹周围癌风险相关。多变量MR发现细胞外基质相关蛋白[胶原α -1(I)链,层粘连蛋白,纤维连接蛋白和粘蛋白]可能在肠道微生物群与盆腹周围癌之间的关联中发挥作用。最后,连通性图确定了27种潜在的候选药物。本研究可为今后对该罕见肿瘤的预防和诊断研究提供理论依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Gut Microbiota Mediate Periampullary Cancer Through Extracellular Matrix Proteins: A Causal Relationship Study

Gut Microbiota Mediate Periampullary Cancer Through Extracellular Matrix Proteins: A Causal Relationship Study

Recent studies have reported that gut microbiota may play a role in the occurrence and development of digestive system cancers. Periampullary cancer is a relatively rare digestive system cancer which lacks effective targeted therapy and specific drugs. The purpose of this study is to elucidate the relationship between periampullary cancer and gut microbiota. This work collected public genome-wide association study (GWAS) data from 211 gut microbial taxa and three types of cancer related to periampullary cancer, which were used for two-sample Mendelian randomisation (MR) analysis. Based on the analysis of differentially expressed genes between periampullary cancer and adjacent normal tissue, extracellular matrix proteins were selected for further multivariable MR analysis. Finally, the Connectivity Map was used to screen potential therapeutic drugs for periampullary cancer. Two-sample MR results confirmed that nine microbial taxa, Tyzzerella, Alloprevotella, Holdemania, LachnospiraceaeUCG010, Terrisporobacter, Alistipes, Rikenellaceae, Anaerofilum and Dialister, were associated with periampullary cancer risk. Multivariable MR discovered extracellular matrix-related proteins [Collagen alpha-1(I) chain, Laminin, Fibronectin and Mucin] that may play a role in the association between gut microbiota and periampullary cancer. Finally, the Connectivity Map identified 27 potential candidate drugs. This study can provide theoretical basis for future prevention and diagnostic research on this rare cancer.

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来源期刊
IET Systems Biology
IET Systems Biology 生物-数学与计算生物学
CiteScore
4.20
自引率
4.30%
发文量
17
审稿时长
>12 weeks
期刊介绍: IET Systems Biology covers intra- and inter-cellular dynamics, using systems- and signal-oriented approaches. Papers that analyse genomic data in order to identify variables and basic relationships between them are considered if the results provide a basis for mathematical modelling and simulation of cellular dynamics. Manuscripts on molecular and cell biological studies are encouraged if the aim is a systems approach to dynamic interactions within and between cells. The scope includes the following topics: Genomics, transcriptomics, proteomics, metabolomics, cells, tissue and the physiome; molecular and cellular interaction, gene, cell and protein function; networks and pathways; metabolism and cell signalling; dynamics, regulation and control; systems, signals, and information; experimental data analysis; mathematical modelling, simulation and theoretical analysis; biological modelling, simulation, prediction and control; methodologies, databases, tools and algorithms for modelling and simulation; modelling, analysis and control of biological networks; synthetic biology and bioengineering based on systems biology.
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