基于家族的选择:增加表型变异的有效方法。

IF 2.2 3区 生物学 Q3 GENETICS & HEREDITY
Shraddha Lall, Chris Milton, Benjamin de Bivort
{"title":"基于家族的选择:增加表型变异的有效方法。","authors":"Shraddha Lall, Chris Milton, Benjamin de Bivort","doi":"10.1093/g3journal/jkaf165","DOIUrl":null,"url":null,"abstract":"<p><p>Persistent idiosyncrasies in behavioral phenotypes have been documented across animal taxa. These individual differences among organisms from the same genotype and reared in identical environments can result in phenotypic variability in the absence of genetic variation. While there is strong evidence to suggest that variability of traits can be heritable and determined by the genotype of an organism, little is known about how selection can specifically shape this heritable variance. Here, we describe a Python-based model of directional artificial selection for increasing the variability of a polygenic trait of interest. Specifically, our model focuses on variability in left-vs-right turn bias in Drosophila melanogaster. While the mean value of turn bias for a genotype is non-heritable and constant across genotypes, the variability of turn bias is a heritable and polygenic trait, varying dramatically among different genetic lines. Using our model, we compare different selection regimes and predict selection dynamics at population and genetic levels. We find that introducing population structure via a family-based selection regime can significantly affect selection response. When selection for increased variability is implemented on the basis of independently measured traits of individuals, the response is slower, but leads to a population with a greater genetic diversity. In contrast, when selection is implemented by measuring traits of families with half or full siblings, the response is faster, albeit with a reduced final genetic diversity in the population. Our model provides a useful starting point to study the effect of different selection regimes on any polygenic trait of interest. We can use this model to predict responses of laboratory-based selection experiments and implement feasible experiments for selection of complex polygenic traits in the laboratory.</p>","PeriodicalId":12468,"journal":{"name":"G3: Genes|Genomes|Genetics","volume":" ","pages":""},"PeriodicalIF":2.2000,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12506656/pdf/","citationCount":"0","resultStr":"{\"title\":\"Family-based selection: an efficient method for increasing phenotypic variability.\",\"authors\":\"Shraddha Lall, Chris Milton, Benjamin de Bivort\",\"doi\":\"10.1093/g3journal/jkaf165\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Persistent idiosyncrasies in behavioral phenotypes have been documented across animal taxa. These individual differences among organisms from the same genotype and reared in identical environments can result in phenotypic variability in the absence of genetic variation. While there is strong evidence to suggest that variability of traits can be heritable and determined by the genotype of an organism, little is known about how selection can specifically shape this heritable variance. Here, we describe a Python-based model of directional artificial selection for increasing the variability of a polygenic trait of interest. Specifically, our model focuses on variability in left-vs-right turn bias in Drosophila melanogaster. While the mean value of turn bias for a genotype is non-heritable and constant across genotypes, the variability of turn bias is a heritable and polygenic trait, varying dramatically among different genetic lines. Using our model, we compare different selection regimes and predict selection dynamics at population and genetic levels. We find that introducing population structure via a family-based selection regime can significantly affect selection response. When selection for increased variability is implemented on the basis of independently measured traits of individuals, the response is slower, but leads to a population with a greater genetic diversity. In contrast, when selection is implemented by measuring traits of families with half or full siblings, the response is faster, albeit with a reduced final genetic diversity in the population. Our model provides a useful starting point to study the effect of different selection regimes on any polygenic trait of interest. We can use this model to predict responses of laboratory-based selection experiments and implement feasible experiments for selection of complex polygenic traits in the laboratory.</p>\",\"PeriodicalId\":12468,\"journal\":{\"name\":\"G3: Genes|Genomes|Genetics\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2025-10-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12506656/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"G3: Genes|Genomes|Genetics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1093/g3journal/jkaf165\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"G3: Genes|Genomes|Genetics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/g3journal/jkaf165","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

摘要

行为表型的持久特质已被记录在动物分类群中。来自相同基因型和在相同环境中饲养的生物体之间的这些个体差异可能在没有遗传变异的情况下导致表型变异。虽然有强有力的证据表明,性状的可变性可以遗传,并由生物体的基因型决定,但人们对选择如何具体塑造这种遗传变异知之甚少。在这里,我们描述了一个基于python的定向人工选择模型,以增加感兴趣的多基因性状的可变性。具体来说,我们的模型关注的是黑腹果蝇的左转与右转偏好的可变性。一个基因型的转向偏倚平均值在不同基因型之间是不变的、不可遗传的,而转向偏倚的变异性是一种可遗传的多基因性状,在不同的遗传系之间差异很大。利用我们的模型,我们比较了不同的选择制度,并预测了种群和遗传水平上的选择动态。我们发现,通过以家庭为基础的选择机制引入种群结构可以显著影响选择反应。当选择增加的变异是基于独立测量的个体特征时,反应较慢,但导致种群具有更大的遗传多样性。相比之下,当通过测量有半兄弟姐妹或全兄弟姐妹的家庭的特征来进行选择时,反应会更快,尽管最终种群的遗传多样性会减少。我们的模型为研究不同选择制度对任何感兴趣的多基因性状的影响提供了一个有用的起点。我们可以利用该模型预测实验室选择实验的反应,为复杂多基因性状的实验室选择实施可行的实验。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Family-based selection: an efficient method for increasing phenotypic variability.

Persistent idiosyncrasies in behavioral phenotypes have been documented across animal taxa. These individual differences among organisms from the same genotype and reared in identical environments can result in phenotypic variability in the absence of genetic variation. While there is strong evidence to suggest that variability of traits can be heritable and determined by the genotype of an organism, little is known about how selection can specifically shape this heritable variance. Here, we describe a Python-based model of directional artificial selection for increasing the variability of a polygenic trait of interest. Specifically, our model focuses on variability in left-vs-right turn bias in Drosophila melanogaster. While the mean value of turn bias for a genotype is non-heritable and constant across genotypes, the variability of turn bias is a heritable and polygenic trait, varying dramatically among different genetic lines. Using our model, we compare different selection regimes and predict selection dynamics at population and genetic levels. We find that introducing population structure via a family-based selection regime can significantly affect selection response. When selection for increased variability is implemented on the basis of independently measured traits of individuals, the response is slower, but leads to a population with a greater genetic diversity. In contrast, when selection is implemented by measuring traits of families with half or full siblings, the response is faster, albeit with a reduced final genetic diversity in the population. Our model provides a useful starting point to study the effect of different selection regimes on any polygenic trait of interest. We can use this model to predict responses of laboratory-based selection experiments and implement feasible experiments for selection of complex polygenic traits in the laboratory.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
G3: Genes|Genomes|Genetics
G3: Genes|Genomes|Genetics GENETICS & HEREDITY-
CiteScore
5.10
自引率
3.80%
发文量
305
审稿时长
3-8 weeks
期刊介绍: G3: Genes, Genomes, Genetics provides a forum for the publication of high‐quality foundational research, particularly research that generates useful genetic and genomic information such as genome maps, single gene studies, genome‐wide association and QTL studies, as well as genome reports, mutant screens, and advances in methods and technology. The Editorial Board of G3 believes that rapid dissemination of these data is the necessary foundation for analysis that leads to mechanistic insights. G3, published by the Genetics Society of America, meets the critical and growing need of the genetics community for rapid review and publication of important results in all areas of genetics. G3 offers the opportunity to publish the puzzling finding or to present unpublished results that may not have been submitted for review and publication due to a perceived lack of a potential high-impact finding. G3 has earned the DOAJ Seal, which is a mark of certification for open access journals, awarded by DOAJ to journals that achieve a high level of openness, adhere to Best Practice and high publishing standards.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信