车轮转动:CHO细胞建模进入数字生物制造时代:副标题:CHO代谢建模。

IF 4.4 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Computational and structural biotechnology journal Pub Date : 2025-06-23 eCollection Date: 2025-01-01 DOI:10.1016/j.csbj.2025.06.035
Sandeep Ranpura, Vishwanathgouda Maralingannavar, Alexandra-Gabriela Gheorghe, Edward Ma, James Morrissey, Michael J Betenbaugh, Deniz Demirhan
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引用次数: 0

摘要

最近使用CHO细胞生产生物制剂的进展部分是由于对细胞培养环境变化如何影响细胞代谢、生产力和最终产品属性的理解的提高。硅模型在绘制各种工艺参数和介质变化对细胞反应的影响方面发挥着重要作用。数据驱动分析、自我学习系统和数字孪生等技术的进步正在加强智能制造的进展,使生产过程能够实时控制。此外,动力学和基于约束的机械建模与组学方法相结合,正越来越多地纳入生物工艺开发和制造创新生态系统。在这篇综述中,我们将CHO中枢代谢作为机制建模的基础,并将讨论扩展到包括各种机制建模方法,强调糖基化和分泌途径的结合。多组学方法提供了对细胞内过程和产品质量与途径之间动态相互作用的更深层次的理解。与此同时,为了实现工业4.0的数字化愿景,机器学习技术在生物制药开发中得到了更广泛的应用。我们讨论了这些技术在预测、推理、优化和控制方面的潜在应用。讨论了大数据分析和人工智能方法在加强智能制造和实现生产过程实时控制方面的作用。最后,我们总结了机器学习和混合模型在CHO生物过程中的应用,旨在为患者更高效、更低成本地开发和生产药物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Wheels turning: CHO cell modeling moves into a digital biomanufacturing era: Subtitle: CHO Metabolic Modeling.

Recent advancements in biologics production using CHO cells have been partly driven by improved understanding of how variations in the cell culture environment influence cellular metabolism, productivity, and the attributes of the final product. In-silico models serve a valuable role in mapping the effects of various process parameters and media changes on cellular response. Advances in technologies such as data-driven analysis, self-learning systems, and digital twins are reinforcing progress toward smart manufacturing, enabling the real-time control of production processes. Furthermore, kinetic, and constraint-based mechanistic modeling, combined with omics approaches, are becoming increasingly incorporated into the bioprocess development and manufacturing innovation ecosystem. In this review, we cover CHO central metabolism as a foundation for mechanistic modeling and extend the discussion to include various mechanistic modeling approaches, highlighting the incorporation of glycosylation and secretory pathways. Multi-omics approaches provide a deeper understanding of intracellular processes and the dynamic interactions between product quality and pathways. In parallel, to achieve the Industry 4.0 vision of digitalization and machine learning techniques are finding wider adoption in biopharmaceutical development. We discuss the potential applications of these techniques for predictions, inference, optimization, and control. The role of big data analytics and artificial intelligence methods in reinforcing progress towards smart manufacturing and enabling real-time control of production processes is discussed. Finally, we summarize the application of machine learning and hybrid models to CHO bioprocesses, aiming to develop and manufacture drugs more efficiently and at a lower cost for patients.

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来源期刊
Computational and structural biotechnology journal
Computational and structural biotechnology journal Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
9.30
自引率
3.30%
发文量
540
审稿时长
6 weeks
期刊介绍: Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to: Structure and function of proteins, nucleic acids and other macromolecules Structure and function of multi-component complexes Protein folding, processing and degradation Enzymology Computational and structural studies of plant systems Microbial Informatics Genomics Proteomics Metabolomics Algorithms and Hypothesis in Bioinformatics Mathematical and Theoretical Biology Computational Chemistry and Drug Discovery Microscopy and Molecular Imaging Nanotechnology Systems and Synthetic Biology
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