Sandeep Ranpura, Vishwanathgouda Maralingannavar, Alexandra-Gabriela Gheorghe, Edward Ma, James Morrissey, Michael J Betenbaugh, Deniz Demirhan
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Furthermore, kinetic, and constraint-based mechanistic modeling, combined with omics approaches, are becoming increasingly incorporated into the bioprocess development and manufacturing innovation ecosystem. In this review, we cover CHO central metabolism as a foundation for mechanistic modeling and extend the discussion to include various mechanistic modeling approaches, highlighting the incorporation of glycosylation and secretory pathways. Multi-omics approaches provide a deeper understanding of intracellular processes and the dynamic interactions between product quality and pathways. In parallel, to achieve the Industry 4.0 vision of digitalization and machine learning techniques are finding wider adoption in biopharmaceutical development. We discuss the potential applications of these techniques for predictions, inference, optimization, and control. The role of big data analytics and artificial intelligence methods in reinforcing progress towards smart manufacturing and enabling real-time control of production processes is discussed. Finally, we summarize the application of machine learning and hybrid models to CHO bioprocesses, aiming to develop and manufacture drugs more efficiently and at a lower cost for patients.</p>","PeriodicalId":10715,"journal":{"name":"Computational and structural biotechnology journal","volume":"27 ","pages":"2796-2813"},"PeriodicalIF":4.4000,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12269988/pdf/","citationCount":"0","resultStr":"{\"title\":\"Wheels turning: CHO cell modeling moves into a digital biomanufacturing era: Subtitle: CHO Metabolic Modeling.\",\"authors\":\"Sandeep Ranpura, Vishwanathgouda Maralingannavar, Alexandra-Gabriela Gheorghe, Edward Ma, James Morrissey, Michael J Betenbaugh, Deniz Demirhan\",\"doi\":\"10.1016/j.csbj.2025.06.035\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Recent advancements in biologics production using CHO cells have been partly driven by improved understanding of how variations in the cell culture environment influence cellular metabolism, productivity, and the attributes of the final product. In-silico models serve a valuable role in mapping the effects of various process parameters and media changes on cellular response. Advances in technologies such as data-driven analysis, self-learning systems, and digital twins are reinforcing progress toward smart manufacturing, enabling the real-time control of production processes. Furthermore, kinetic, and constraint-based mechanistic modeling, combined with omics approaches, are becoming increasingly incorporated into the bioprocess development and manufacturing innovation ecosystem. In this review, we cover CHO central metabolism as a foundation for mechanistic modeling and extend the discussion to include various mechanistic modeling approaches, highlighting the incorporation of glycosylation and secretory pathways. Multi-omics approaches provide a deeper understanding of intracellular processes and the dynamic interactions between product quality and pathways. In parallel, to achieve the Industry 4.0 vision of digitalization and machine learning techniques are finding wider adoption in biopharmaceutical development. We discuss the potential applications of these techniques for predictions, inference, optimization, and control. The role of big data analytics and artificial intelligence methods in reinforcing progress towards smart manufacturing and enabling real-time control of production processes is discussed. Finally, we summarize the application of machine learning and hybrid models to CHO bioprocesses, aiming to develop and manufacture drugs more efficiently and at a lower cost for patients.</p>\",\"PeriodicalId\":10715,\"journal\":{\"name\":\"Computational and structural biotechnology journal\",\"volume\":\"27 \",\"pages\":\"2796-2813\"},\"PeriodicalIF\":4.4000,\"publicationDate\":\"2025-06-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12269988/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and structural biotechnology journal\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1016/j.csbj.2025.06.035\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and structural biotechnology journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.csbj.2025.06.035","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Wheels turning: CHO cell modeling moves into a digital biomanufacturing era: Subtitle: CHO Metabolic Modeling.
Recent advancements in biologics production using CHO cells have been partly driven by improved understanding of how variations in the cell culture environment influence cellular metabolism, productivity, and the attributes of the final product. In-silico models serve a valuable role in mapping the effects of various process parameters and media changes on cellular response. Advances in technologies such as data-driven analysis, self-learning systems, and digital twins are reinforcing progress toward smart manufacturing, enabling the real-time control of production processes. Furthermore, kinetic, and constraint-based mechanistic modeling, combined with omics approaches, are becoming increasingly incorporated into the bioprocess development and manufacturing innovation ecosystem. In this review, we cover CHO central metabolism as a foundation for mechanistic modeling and extend the discussion to include various mechanistic modeling approaches, highlighting the incorporation of glycosylation and secretory pathways. Multi-omics approaches provide a deeper understanding of intracellular processes and the dynamic interactions between product quality and pathways. In parallel, to achieve the Industry 4.0 vision of digitalization and machine learning techniques are finding wider adoption in biopharmaceutical development. We discuss the potential applications of these techniques for predictions, inference, optimization, and control. The role of big data analytics and artificial intelligence methods in reinforcing progress towards smart manufacturing and enabling real-time control of production processes is discussed. Finally, we summarize the application of machine learning and hybrid models to CHO bioprocesses, aiming to develop and manufacture drugs more efficiently and at a lower cost for patients.
期刊介绍:
Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to:
Structure and function of proteins, nucleic acids and other macromolecules
Structure and function of multi-component complexes
Protein folding, processing and degradation
Enzymology
Computational and structural studies of plant systems
Microbial Informatics
Genomics
Proteomics
Metabolomics
Algorithms and Hypothesis in Bioinformatics
Mathematical and Theoretical Biology
Computational Chemistry and Drug Discovery
Microscopy and Molecular Imaging
Nanotechnology
Systems and Synthetic Biology