从组织病理图像中识别结直肠癌组织类型的基于监督的建设性学习模型

IF 2.5 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Kazim Firildak, Gaffari Celik, Muhammed Fatih Talu
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引用次数: 0

摘要

结直肠癌是癌症中死亡率第二高的疾病。早期诊断和治疗可提高生存率。在这项研究中,提出了一种基于监督的建设性学习的模型,用于使用含有苏木精和伊红染色的结肠组织病理学图像的数据集检测结直肠癌。使用的数据集包括多类数据集(Kather- 5k, CRC-7K, NCT-100K)和二进制类数据集(Kather MSI和MHIST)。该模型由编码器(ReFeatureBlock (RFB)、深度卷积(DWC)和全局平均池化(GAP))、投影头和完全连接的分类网络组成。通过这些网络,可以获得重要的特征,降低计算成本,最小化噪声敏感性,并防止差的边际可能性。此外,采用Grad-CAM方法确保模型决策过程的透明度和可解释性。在多个分类实验中,在结合ther- 5k、CRC-7K和NCT-100K数据集的应用中,所提出的模型分别以99.21%的准确率、99.19%的精密度、99.19%的召回率、99.19%的f1评分、99.92%的特异性和99.56%的AUC值取得了最高的性能。此外,在对单个数据集进行的测试中,实现了诸如ather- 5k的99.10%准确率、CRC-7K的99.76%准确率和NCT-100K的99.19%准确率等高性能。在MHIST数据集的二元分类实验中,该模型的准确率为99.52%,精密度为99.30%,召回率为99.49%,f1评分为99.40%,特异性为99.49%,AUC为99.49%,成功率最高。此外,提出的模型与文献中最先进的结直肠癌组织分类技术进行了比较,并对结果进行了讨论。研究结果表明,所提出的模型在统计度量上提供了更高的分类成功率。建议模型的代码可在https://github.com/KAZIMFIRILDAK23/CRC-SCL上公开获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Supervised Constructive Learning-Based Model for Identifying Colorectal Cancer Tissue Types From Histopathological Images

Colorectal cancer is the disease with the second highest mortality rate among cancer types. The survival rate is increased with early diagnosis and treatment of this disease. In this study, a supervised constructive learning based model is proposed for the detection of colorectal cancer using datasets containing hematoxylin and eosin stained colon histopathological images. The datasets used include multi-class datasets (Kather-5K, CRC-7K, NCT-100K) and binary class datasets (Kather MSI and MHIST). The proposed model consists of an encoder (ReFeatureBlock (RFB), depthwise convolution (DWC), and global average pooling (GAP)), a projection head, and fully connected classification networks. With these networks, it is possible to obtain important features, reduce the computational cost, minimize noise sensitivity, and prevent poor margin possibilities. Additionally, the Grad-CAM method was used to ensure transparency and explainability of the model's decision-making processes. In multiple classification experiments, in applications performed by combining Kather-5K, CRC-7K, and NCT-100K datasets, the proposed model achieved the highest performance with 99.21% accuracy, 99.19% precision, 99.19% recall, 99.19% F1-score, 99.92% specificity, and 99.56% AUC values, respectively. In addition, in tests performed on individual datasets, high performances such as 99.10% accuracy for Kather-5K, 99.76% accuracy for CRC-7K, and 99.19% accuracy for NCT-100K were achieved. In binary classification experiments with the MHIST dataset, the proposed model showed the highest success with 99.52% accuracy, 99.30% precision, 99.49% recall, 99.40% F1-score, 99.49% specificity, and 99.49% AUC, respectively. Moreover, the proposed model is compared with state-of-the-art techniques in the literature in the classification of colorectal cancer tissues, and the results are discussed. The findings show that the proposed model provides higher classification success in statistical metrics. The codes of the proposed model are publicly available at https://github.com/KAZIMFIRILDAK23/CRC-SCL.

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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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