Kazim Firildak, Gaffari Celik, Muhammed Fatih Talu
{"title":"从组织病理图像中识别结直肠癌组织类型的基于监督的建设性学习模型","authors":"Kazim Firildak, Gaffari Celik, Muhammed Fatih Talu","doi":"10.1002/ima.70161","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>Colorectal cancer is the disease with the second highest mortality rate among cancer types. The survival rate is increased with early diagnosis and treatment of this disease. In this study, a supervised constructive learning based model is proposed for the detection of colorectal cancer using datasets containing hematoxylin and eosin stained colon histopathological images. The datasets used include multi-class datasets (Kather-5K, CRC-7K, NCT-100K) and binary class datasets (Kather MSI and MHIST). The proposed model consists of an encoder (ReFeatureBlock (RFB), depthwise convolution (DWC), and global average pooling (GAP)), a projection head, and fully connected classification networks. With these networks, it is possible to obtain important features, reduce the computational cost, minimize noise sensitivity, and prevent poor margin possibilities. Additionally, the Grad-CAM method was used to ensure transparency and explainability of the model's decision-making processes. In multiple classification experiments, in applications performed by combining Kather-5K, CRC-7K, and NCT-100K datasets, the proposed model achieved the highest performance with 99.21% accuracy, 99.19% precision, 99.19% recall, 99.19% F1-score, 99.92% specificity, and 99.56% AUC values, respectively. In addition, in tests performed on individual datasets, high performances such as 99.10% accuracy for Kather-5K, 99.76% accuracy for CRC-7K, and 99.19% accuracy for NCT-100K were achieved. In binary classification experiments with the MHIST dataset, the proposed model showed the highest success with 99.52% accuracy, 99.30% precision, 99.49% recall, 99.40% F1-score, 99.49% specificity, and 99.49% AUC, respectively. Moreover, the proposed model is compared with state-of-the-art techniques in the literature in the classification of colorectal cancer tissues, and the results are discussed. The findings show that the proposed model provides higher classification success in statistical metrics. The codes of the proposed model are publicly available at https://github.com/KAZIMFIRILDAK23/CRC-SCL.</p>\n </div>","PeriodicalId":14027,"journal":{"name":"International Journal of Imaging Systems and Technology","volume":"35 4","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Supervised Constructive Learning-Based Model for Identifying Colorectal Cancer Tissue Types From Histopathological Images\",\"authors\":\"Kazim Firildak, Gaffari Celik, Muhammed Fatih Talu\",\"doi\":\"10.1002/ima.70161\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>Colorectal cancer is the disease with the second highest mortality rate among cancer types. The survival rate is increased with early diagnosis and treatment of this disease. In this study, a supervised constructive learning based model is proposed for the detection of colorectal cancer using datasets containing hematoxylin and eosin stained colon histopathological images. The datasets used include multi-class datasets (Kather-5K, CRC-7K, NCT-100K) and binary class datasets (Kather MSI and MHIST). The proposed model consists of an encoder (ReFeatureBlock (RFB), depthwise convolution (DWC), and global average pooling (GAP)), a projection head, and fully connected classification networks. With these networks, it is possible to obtain important features, reduce the computational cost, minimize noise sensitivity, and prevent poor margin possibilities. Additionally, the Grad-CAM method was used to ensure transparency and explainability of the model's decision-making processes. In multiple classification experiments, in applications performed by combining Kather-5K, CRC-7K, and NCT-100K datasets, the proposed model achieved the highest performance with 99.21% accuracy, 99.19% precision, 99.19% recall, 99.19% F1-score, 99.92% specificity, and 99.56% AUC values, respectively. In addition, in tests performed on individual datasets, high performances such as 99.10% accuracy for Kather-5K, 99.76% accuracy for CRC-7K, and 99.19% accuracy for NCT-100K were achieved. In binary classification experiments with the MHIST dataset, the proposed model showed the highest success with 99.52% accuracy, 99.30% precision, 99.49% recall, 99.40% F1-score, 99.49% specificity, and 99.49% AUC, respectively. Moreover, the proposed model is compared with state-of-the-art techniques in the literature in the classification of colorectal cancer tissues, and the results are discussed. The findings show that the proposed model provides higher classification success in statistical metrics. The codes of the proposed model are publicly available at https://github.com/KAZIMFIRILDAK23/CRC-SCL.</p>\\n </div>\",\"PeriodicalId\":14027,\"journal\":{\"name\":\"International Journal of Imaging Systems and Technology\",\"volume\":\"35 4\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-07-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Imaging Systems and Technology\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/ima.70161\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENGINEERING, ELECTRICAL & ELECTRONIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Imaging Systems and Technology","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ima.70161","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
Supervised Constructive Learning-Based Model for Identifying Colorectal Cancer Tissue Types From Histopathological Images
Colorectal cancer is the disease with the second highest mortality rate among cancer types. The survival rate is increased with early diagnosis and treatment of this disease. In this study, a supervised constructive learning based model is proposed for the detection of colorectal cancer using datasets containing hematoxylin and eosin stained colon histopathological images. The datasets used include multi-class datasets (Kather-5K, CRC-7K, NCT-100K) and binary class datasets (Kather MSI and MHIST). The proposed model consists of an encoder (ReFeatureBlock (RFB), depthwise convolution (DWC), and global average pooling (GAP)), a projection head, and fully connected classification networks. With these networks, it is possible to obtain important features, reduce the computational cost, minimize noise sensitivity, and prevent poor margin possibilities. Additionally, the Grad-CAM method was used to ensure transparency and explainability of the model's decision-making processes. In multiple classification experiments, in applications performed by combining Kather-5K, CRC-7K, and NCT-100K datasets, the proposed model achieved the highest performance with 99.21% accuracy, 99.19% precision, 99.19% recall, 99.19% F1-score, 99.92% specificity, and 99.56% AUC values, respectively. In addition, in tests performed on individual datasets, high performances such as 99.10% accuracy for Kather-5K, 99.76% accuracy for CRC-7K, and 99.19% accuracy for NCT-100K were achieved. In binary classification experiments with the MHIST dataset, the proposed model showed the highest success with 99.52% accuracy, 99.30% precision, 99.49% recall, 99.40% F1-score, 99.49% specificity, and 99.49% AUC, respectively. Moreover, the proposed model is compared with state-of-the-art techniques in the literature in the classification of colorectal cancer tissues, and the results are discussed. The findings show that the proposed model provides higher classification success in statistical metrics. The codes of the proposed model are publicly available at https://github.com/KAZIMFIRILDAK23/CRC-SCL.
期刊介绍:
The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals.
IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging.
The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered.
The scope of the journal includes, but is not limited to, the following in the context of biomedical research:
Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.;
Neuromodulation and brain stimulation techniques such as TMS and tDCS;
Software and hardware for imaging, especially related to human and animal health;
Image segmentation in normal and clinical populations;
Pattern analysis and classification using machine learning techniques;
Computational modeling and analysis;
Brain connectivity and connectomics;
Systems-level characterization of brain function;
Neural networks and neurorobotics;
Computer vision, based on human/animal physiology;
Brain-computer interface (BCI) technology;
Big data, databasing and data mining.