数字显微囊胚图像的计算机辅助分级系统

IF 2.5 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Shimaa M.Khder, Eman Anwar Hassan Mohamed, Ahmed Elbialy, Inas A.Yassine
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引用次数: 0

摘要

囊胚分级是影响体外受精(IVF)治疗周期成功的关键因素之一。囊胚形态分级传统上是通过人工显微镜检查进行的。人工显微囊胚形态分级是一项耗时的任务,并且存在观察者内部和观察者之间的差异。因此,囊胚分级自动化对体外受精的成功至关重要。本文提出了一种基于Gardner分级系统的囊胚图像计算机辅助分级系统。加德纳的分级系统由三个部分组成,对应于囊胚的特定区域。每个组件都有自己的类。第一个组成部分,扩展,分为六个等级,从1到6。第二个组成部分是内细胞质量(ICM),分为三个等级(A-B-C)。第三部分是营养外胚层(TE),分为三个等级(A-B-C)。该系统包括三个基本阶段:数据采集、数据准备和分类。该数据集来自埃及开罗的“男孩和女孩”诊所中心。该数据集包括1015张囊胚图像,提取自倒置显微镜“Nikon eclipse Ti-U”拍摄的651张图像,分辨率为640 × 480像素。数据准备阶段包括囊胚提取和定位,然后由经验丰富的胚胎学家对囊胚进行标记。随后进行数据扩充,以增强训练模型在有限数据集上的鲁棒性和泛化能力。随后,本工作通过使用包括VGG16、RESNET50、MobileNetv2、EfficientNetB0和YOLOv8在内的多个卷积神经网络(cnn)来选择囊胚的最佳分类框架。我们工作的新颖性是基于使用单个静态显微图像的标准加德纳分级系统的完全自动化。结果表明,精细的YOLOv8框架在扩展、TE和ICM上分别达到了97%、82%和89%的最高准确率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Computer Aided Grading System of Digital Microscopic Blastocyst Images

Blastocyst grading is among the critical factors that influence the success of in vitro fertilization (IVF) treatment cycles. Blastocyst morphology grading is traditionally performed through manual microscope examinations. Manual microscopic blastocyst morphological grading is a time-consuming task that suffers from intraobserver and interobserver variation. Therefore, automation of blastocyst grading is essential for IVF success. In this paper, we propose a computer-aided grading system for blastocyst images based on Gardner's grading system. Gardner's grading system consists of three components that correspond to specific regions of the blastocyst. Each component has its own classes. The first component, Expansion, is graded into six grades ranging from 1 to 6. The second component is inner cell mass (ICM) grading into three grades (A-B-C). The third component is trophectoderm (TE) grading into three grades (A-B-C). The proposed system is comprised of three basic stages: dataset acquisition, data preparation, and classification. The dataset was acquired from the “Boy and Girl” clinic center, Cairo, Egypt. The dataset comprises 1015 blastocyst images, extracted from 651 images captured by inverted microscope “Nikon eclipse Ti-U” with a resolution of 640 × 480 pixels. The data preparation stage comprises of blastocysts extraction and localization followed by blastocyst labeling by an experienced embryologist. Data augmentation was, later, performed to enhance the robustness and generalize the capability of the trained models on limited datasets. Subsequently, this work contributes by employing many convolutional neural networks (CNNs) including: VGG16, RESNET50, MobileNetv2, EfficientNetB0, and YOLOv8 to choose the best classification framework for blastocysts. The novelty of our work is based on full automation of standard Gardner's grading system using single static microscopic image. The results showed that the fine YOLOv8 framework achieved the highest accuracy of 97%, 82%, and 89% for expansion, TE, and ICM, respectively.

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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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