Sooyon Kim , Yongtaek Lim , Sungjun Lim , Gyeongdeok Seo , Jihee Kim , Hojun Park , Jaehun Jung , Kyungwoo Song
{"title":"基于双多任务高斯过程的COVID-19预测。","authors":"Sooyon Kim , Yongtaek Lim , Sungjun Lim , Gyeongdeok Seo , Jihee Kim , Hojun Park , Jaehun Jung , Kyungwoo Song","doi":"10.1016/j.jbi.2025.104872","DOIUrl":null,"url":null,"abstract":"<div><div>This paper addresses a real-world multi-task prediction problem with time-series characteristics by proposing a novel Doubly Multi-Task Gaussian Process (DMTGP) model. Motivated by strong correlations between the number of confirmed cases and deaths, as well as between cases across the different countries, the model incorporates task-wise correlations to predict the number of COVID-19 patients, considering both task-specific (individual) and cross-task (shared) information to enhance overall performance. We constructed a database for three East Asian countries — Japan, South Korea, and Taiwan — and aim to simultaneously predict the number of confirmed cases and deaths in each country. To model the interactions among these countries, we employed a Transformer encoder layer to calculate cross-attention scores. Qualitative analysis of the attention score map demonstrates that our framework effectively captures the dynamic relationships between multiple nations over time. Our experimental results show that the DMTGP model outperforms other baseline models in handling doubly multiple tasks.</div></div>","PeriodicalId":15263,"journal":{"name":"Journal of Biomedical Informatics","volume":"169 ","pages":"Article 104872"},"PeriodicalIF":4.5000,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"COVID-19 prediction with doubly multi-task Gaussian Process\",\"authors\":\"Sooyon Kim , Yongtaek Lim , Sungjun Lim , Gyeongdeok Seo , Jihee Kim , Hojun Park , Jaehun Jung , Kyungwoo Song\",\"doi\":\"10.1016/j.jbi.2025.104872\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This paper addresses a real-world multi-task prediction problem with time-series characteristics by proposing a novel Doubly Multi-Task Gaussian Process (DMTGP) model. Motivated by strong correlations between the number of confirmed cases and deaths, as well as between cases across the different countries, the model incorporates task-wise correlations to predict the number of COVID-19 patients, considering both task-specific (individual) and cross-task (shared) information to enhance overall performance. We constructed a database for three East Asian countries — Japan, South Korea, and Taiwan — and aim to simultaneously predict the number of confirmed cases and deaths in each country. To model the interactions among these countries, we employed a Transformer encoder layer to calculate cross-attention scores. Qualitative analysis of the attention score map demonstrates that our framework effectively captures the dynamic relationships between multiple nations over time. Our experimental results show that the DMTGP model outperforms other baseline models in handling doubly multiple tasks.</div></div>\",\"PeriodicalId\":15263,\"journal\":{\"name\":\"Journal of Biomedical Informatics\",\"volume\":\"169 \",\"pages\":\"Article 104872\"},\"PeriodicalIF\":4.5000,\"publicationDate\":\"2025-07-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biomedical Informatics\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1532046425001017\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomedical Informatics","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1532046425001017","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
COVID-19 prediction with doubly multi-task Gaussian Process
This paper addresses a real-world multi-task prediction problem with time-series characteristics by proposing a novel Doubly Multi-Task Gaussian Process (DMTGP) model. Motivated by strong correlations between the number of confirmed cases and deaths, as well as between cases across the different countries, the model incorporates task-wise correlations to predict the number of COVID-19 patients, considering both task-specific (individual) and cross-task (shared) information to enhance overall performance. We constructed a database for three East Asian countries — Japan, South Korea, and Taiwan — and aim to simultaneously predict the number of confirmed cases and deaths in each country. To model the interactions among these countries, we employed a Transformer encoder layer to calculate cross-attention scores. Qualitative analysis of the attention score map demonstrates that our framework effectively captures the dynamic relationships between multiple nations over time. Our experimental results show that the DMTGP model outperforms other baseline models in handling doubly multiple tasks.
期刊介绍:
The Journal of Biomedical Informatics reflects a commitment to high-quality original research papers, reviews, and commentaries in the area of biomedical informatics methodology. Although we publish articles motivated by applications in the biomedical sciences (for example, clinical medicine, health care, population health, and translational bioinformatics), the journal emphasizes reports of new methodologies and techniques that have general applicability and that form the basis for the evolving science of biomedical informatics. Articles on medical devices; evaluations of implemented systems (including clinical trials of information technologies); or papers that provide insight into a biological process, a specific disease, or treatment options would generally be more suitable for publication in other venues. Papers on applications of signal processing and image analysis are often more suitable for biomedical engineering journals or other informatics journals, although we do publish papers that emphasize the information management and knowledge representation/modeling issues that arise in the storage and use of biological signals and images. System descriptions are welcome if they illustrate and substantiate the underlying methodology that is the principal focus of the report and an effort is made to address the generalizability and/or range of application of that methodology. Note also that, given the international nature of JBI, papers that deal with specific languages other than English, or with country-specific health systems or approaches, are acceptable for JBI only if they offer generalizable lessons that are relevant to the broad JBI readership, regardless of their country, language, culture, or health system.