螺旋环和三环异恶唑啉合成的分子电子密度理论研究及其抗结核活性的分子对接评价

IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC
Asmita Mondal, Luis R. Domingo, Haydar A. Mohammad-Salim, Nivedita Acharjee
{"title":"螺旋环和三环异恶唑啉合成的分子电子密度理论研究及其抗结核活性的分子对接评价","authors":"Asmita Mondal,&nbsp;Luis R. Domingo,&nbsp;Haydar A. Mohammad-Salim,&nbsp;Nivedita Acharjee","doi":"10.1002/poc.70028","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>The [3 + 2] cycloaddition (32CA) reactions of aryl and heteroaryl nitrile oxides with (S)-(−)-β-pinene and (R)-(+)-α-pinene have been theoretically studied from the Molecular Electron Density Theory (MEDT) perspective and a molecular docking evaluation for the antituberculosis activity of the isoxazoline products. The studied 32CA reactions show activation Gibbs free energies between 23.8 and 31.6 kcal·mol<sup>−1</sup>, consistent with their zwitterionic character and exclusive regioselectivity, in complete agreement with the experiments. <i>Two-stage one-step</i> mechanism with a very low polar character is predicted. The molecular mechanism has been established from the Bonding Evolution Theory (BET) analysis along the reaction path, showing early transition state structures, with weak non-covalent interactions indicated from the quantum theory of atom-in-molecules (QTAIM) analysis. The isoxazoline products for the 32CA reactions of (S)-(−)-β-pinene show appreciable binding affinities towards <i>Mycobacterium tuberculosis</i> transcriptional repressor EthR2, revealing them as promising candidates with antituberculosis potential.</p>\n </div>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"38 8","pages":""},"PeriodicalIF":1.9000,"publicationDate":"2025-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A Molecular Electron Density Theory Study for the Synthesis of Spirocyclic and Tricyclic Isoxazolines and Their Molecular Docking Evaluation for Antituberculosis Activity\",\"authors\":\"Asmita Mondal,&nbsp;Luis R. Domingo,&nbsp;Haydar A. Mohammad-Salim,&nbsp;Nivedita Acharjee\",\"doi\":\"10.1002/poc.70028\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>The [3 + 2] cycloaddition (32CA) reactions of aryl and heteroaryl nitrile oxides with (S)-(−)-β-pinene and (R)-(+)-α-pinene have been theoretically studied from the Molecular Electron Density Theory (MEDT) perspective and a molecular docking evaluation for the antituberculosis activity of the isoxazoline products. The studied 32CA reactions show activation Gibbs free energies between 23.8 and 31.6 kcal·mol<sup>−1</sup>, consistent with their zwitterionic character and exclusive regioselectivity, in complete agreement with the experiments. <i>Two-stage one-step</i> mechanism with a very low polar character is predicted. The molecular mechanism has been established from the Bonding Evolution Theory (BET) analysis along the reaction path, showing early transition state structures, with weak non-covalent interactions indicated from the quantum theory of atom-in-molecules (QTAIM) analysis. The isoxazoline products for the 32CA reactions of (S)-(−)-β-pinene show appreciable binding affinities towards <i>Mycobacterium tuberculosis</i> transcriptional repressor EthR2, revealing them as promising candidates with antituberculosis potential.</p>\\n </div>\",\"PeriodicalId\":16829,\"journal\":{\"name\":\"Journal of Physical Organic Chemistry\",\"volume\":\"38 8\",\"pages\":\"\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2025-07-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Physical Organic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/poc.70028\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, ORGANIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Physical Organic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/poc.70028","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, ORGANIC","Score":null,"Total":0}
引用次数: 0

摘要

从分子电子密度理论(MEDT)的角度对芳基和杂芳基腈氧化物与(S)-(−)-β-蒎烯和(R)-(+)-α-蒎烯的[3 + 2]环加成(32CA)反应进行了理论研究,并对异恶唑啉产物抗结核活性进行了分子对接评价。所研究的32CA反应的活化吉布斯自由能在23.8 ~ 31.6 kcal·mol−1之间,符合其两性离子性质和专一的区域选择性,与实验结果完全一致。预测了具有极低极性特征的两阶段一步机理。根据键演化理论(BET)的分析,在反应路径上建立了分子机理,显示出早期的过渡态结构,并根据分子中原子量子理论(QTAIM)的分析表明存在弱的非共价相互作用。(S)-(−)-β-蒎烯32CA反应的异恶唑啉产物与结核分枝杆菌转录抑制因子EthR2具有明显的结合亲和力,表明它们具有抗结核潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Molecular Electron Density Theory Study for the Synthesis of Spirocyclic and Tricyclic Isoxazolines and Their Molecular Docking Evaluation for Antituberculosis Activity

The [3 + 2] cycloaddition (32CA) reactions of aryl and heteroaryl nitrile oxides with (S)-(−)-β-pinene and (R)-(+)-α-pinene have been theoretically studied from the Molecular Electron Density Theory (MEDT) perspective and a molecular docking evaluation for the antituberculosis activity of the isoxazoline products. The studied 32CA reactions show activation Gibbs free energies between 23.8 and 31.6 kcal·mol−1, consistent with their zwitterionic character and exclusive regioselectivity, in complete agreement with the experiments. Two-stage one-step mechanism with a very low polar character is predicted. The molecular mechanism has been established from the Bonding Evolution Theory (BET) analysis along the reaction path, showing early transition state structures, with weak non-covalent interactions indicated from the quantum theory of atom-in-molecules (QTAIM) analysis. The isoxazoline products for the 32CA reactions of (S)-(−)-β-pinene show appreciable binding affinities towards Mycobacterium tuberculosis transcriptional repressor EthR2, revealing them as promising candidates with antituberculosis potential.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
3.60
自引率
11.10%
发文量
161
审稿时长
2.3 months
期刊介绍: The Journal of Physical Organic Chemistry is the foremost international journal devoted to the relationship between molecular structure and chemical reactivity in organic systems. It publishes Research Articles, Reviews and Mini Reviews based on research striving to understand the principles governing chemical structures in relation to activity and transformation with physical and mathematical rigor, using results derived from experimental and computational methods. Physical Organic Chemistry is a central and fundamental field with multiple applications in fields such as molecular recognition, supramolecular chemistry, catalysis, photochemistry, biological and material sciences, nanotechnology and surface science.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信