组织学中的本福德定律

Q2 Medicine
Jasmine Caballero , Daniel Gonzalez , Dustin La Fleur , Sai Karan Vamsi Guda , Cynthia Duran , Kaitlin Sime
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引用次数: 0

摘要

数字病理学是一个新兴的领域,由于其比传统病理学方法有许多优点而越来越受欢迎。数字病理学允许对组织样本进行远程检查,提高效率并降低成本。数字病理学领域正在经历数据的繁荣,为以前未在病理学中使用的新工具的实施创造了空间。本福德定律是一种统计工具,通常被其他顶级组织用于分析大型数据集。本福德定律是关于第一位和第二位数字出现的频率以及它们是否会在自然中正常出现的定律。随着医学多个领域的研究进入数字时代,曾经在其他地方用于分析数字图像的工具可以很好地转化为病理学。定量组织形态计量学是数字病理学中的一种工具,用于分析数字图像并收集整个幻灯片图像的形态学和组织学数据,随着数字病理学中越来越多的技术被开发,例如深度学习,创建更准确的细胞3D分析。需要简单快捷的工具来分析快速提取的大型数据集。我们相信本福德定律是一种统计前景,可以很容易地在全幻灯片图像分析中实现类似的应用。当一个系统被疾病破坏时,它会扭曲整个器官中细胞的正常、自然生长。像QuPath这样的开放获取工具已经创造了一种方法来获取要分析的数据类别,比如细胞的大小或它吸收的染色量。收集正常肝细胞的切片,并与肝癌的切片进行比较。选择肝脏是因为它的细胞质边界和细胞核划分清楚。共收集肝组织切片25张。对自然度图进行比较,分析检测正常肝细胞和癌肝细胞之间差异的方法。从7例肿瘤患者的15片肝组织样本(共15片)中收集了206,700个细胞,从5片正常肝组织样本中收集了116,339个细胞,从20片中收集了323,039个细胞。在这7名癌症患者中,5名先前被诊断为胆管癌,2名被诊断为腺瘤/腺癌。研究发现,在QuPath提供的细胞大小、细胞核大小、吸光度等13个数据类别中,与Benford’s Law of Naturalness相比,有2个数据类别符合卡方拟合优度(χ2)标准,提供了最显著的反馈。由于QuPath无法准确区分所有细胞质边界,因此没有使用描述尺寸测量的类别。在两种确实相关的类别中,比如那些使用染色吸光度的,超过临界值的载玻片中有62.5%含有被诊断为癌症的人的细胞。相比之下,所有正常的幻灯片显示非常低的方差。所有来自癌症患者的玻片的检验统计量都在6分以上,而正常组织玻片的检验统计量低于1.5分,这与本福德定律密切相关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Benford's Law in histology
Digital pathology is an emerging field that is gaining popularity due to its numerous advantages over traditional pathology methods. Digital pathology allows for the remote examination of tissue samples, increasing efficiency and reducing costs. The field of digital pathology is experiencing a boom of data, creating space for new tools to be implemented that have not been used in pathology prior. Benford's Law is a statistical tool commonly used to analyze large datasets by other top organizations. Benford's Law is a law of frequency of first and second digits and whether they would appear normally in nature. With research in multiple fields of medicine moving into a digital era, tools that had once been used elsewhere to analyze digital images could translate well into pathology. Quantitative histomorphometry is a tool in digital pathology that analyzes digital images and collects morphological and histological data of whole-slide images, with more techniques being developed in digital pathology, such as deep learning, creating a more accurate 3D analysis of the cell. Easy and quick tools are needed to analyze the large datasets that are being extracted quickly. We believe that Benford's Law is a statistical outlook that can be easily implemented for similar use in whole-slide image analysis. When a system is disrupted by disease, it will distort the normal, natural growth of cells throughout the organ.
Open access tools such as QuPath have created a way to obtain categories of data to analyze, such as the size of a cell or the amount of staining it absorbs. Slides of normal liver cells were collected and compared to slides of a liver with cancer. The liver was selected because of its well-demarcated cytoplastic borders and nucleus. A total of 25 liver tissue slides were collected. The graph of naturalness is compared to analyze ways to detect variability between normal liver cells and cancer liver cells. 206,700 cells from 15 slides of 7 cancer patients' liver tissue samples (15 slides total) and 116,339 cells from 5 slides of normal liver tissue were collected, totaling 323,039 cells from 20 slides. Of the seven cancer patients, five were previously diagnosed with cholangiocarcinoma, and two were diagnosed with adenomas/adenocarcinoma.
The study found that of the 13 data categories provided by QuPath, such as cell size, nucleus size, and color absorbance, two met the Chi-square goodness of fit (χ2) criteria compared to Benford's Law of Naturalness, providing the most significant feedback. Due to QuPath's inability to distinguish all cytoplastic borders accurately, categories that depict size measurements were not used. Of the two categories that did correlate, such as those that used stain absorbance, 62.5% of slides that exceeded the critical value contained cells of someone diagnosed with cancer. In contrast, all normal slides showed a very low variance. All slides from a cancer patient showed a test statistic above 6 points, whereas the normal tissue slides showed a test statistic below 1.5, strongly correlating with Benford's Law.
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来源期刊
Journal of Pathology Informatics
Journal of Pathology Informatics Medicine-Pathology and Forensic Medicine
CiteScore
3.70
自引率
0.00%
发文量
2
审稿时长
18 weeks
期刊介绍: The Journal of Pathology Informatics (JPI) is an open access peer-reviewed journal dedicated to the advancement of pathology informatics. This is the official journal of the Association for Pathology Informatics (API). The journal aims to publish broadly about pathology informatics and freely disseminate all articles worldwide. This journal is of interest to pathologists, informaticians, academics, researchers, health IT specialists, information officers, IT staff, vendors, and anyone with an interest in informatics. We encourage submissions from anyone with an interest in the field of pathology informatics. We publish all types of papers related to pathology informatics including original research articles, technical notes, reviews, viewpoints, commentaries, editorials, symposia, meeting abstracts, book reviews, and correspondence to the editors. All submissions are subject to rigorous peer review by the well-regarded editorial board and by expert referees in appropriate specialties.
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