Rubina Bibi , Sameen Fatima , Jawaria Sadiq , Muhammad Tariq , Ajaz Hussain , Faiz Rasool , Sana Iqbal , Kausar Hussain Shah , Shabbir Hussain , Muhammad Sirajuddin , Muhammad Yar , Khurshid Ayub
{"title":"五甲基环戊二烯基钌(III)羧酸配合物的合成、计算筛选、抗糖尿病、抗菌、DNA、药代动力学/ ADMET分析和分子对接研究","authors":"Rubina Bibi , Sameen Fatima , Jawaria Sadiq , Muhammad Tariq , Ajaz Hussain , Faiz Rasool , Sana Iqbal , Kausar Hussain Shah , Shabbir Hussain , Muhammad Sirajuddin , Muhammad Yar , Khurshid Ayub","doi":"10.1016/j.jorganchem.2025.123775","DOIUrl":null,"url":null,"abstract":"<div><div>The current study reports synthesis, characterization, computational investigation and biological evaluation of designed pentamethylcyclopentadienyl ruthenium(III) carboxylate complex [Ru*Cp (TA)Cl]. Structural evaluation has been done <em>via</em> FTIR, UV–Visible, <sup>1</sup>HNMR and elemental analysis. The obtained Δυ (υ<sub>as</sub> COO<sup>-</sup> – υ<sub>sm</sub> COO<sup>-</sup>) findings found as 244 cm<sup>-1</sup>, which explore bidendate mode of carboxylate moiety. Quantum computations were performed utilizing the DTF / B3LYP methodology to determine structural parameters. Vibrational frequency computations were performed using basis set (B3LYP / 6–31 G (d, p) LanL2DZ), based on total energy distribution (TED) of vibrational mode, which was calculated using scaled quantum mechanics (SQM). In FMO calculations, lower energy gap [LUMO<img>HOMO] was used to evaluate global reactivity parameters (GPR), charge transfer, and bioactivity. Structural-activity relationship (SAR) was employed to explain how <em>in vitro</em> biological activity results supported in silico findings. The SSDNA-binding constant 3.3 × 10<sup>6</sup> ± 2.73 M<sup>-1</sup> indicated strong biding potential of [Ru*Cp (TA)Cl] with DNA which was corroborated by docking score -6.62 Kcal/mol. Studied complex has considerable antibacterial potency with <em>Bacillus subtilis</em> (5ZW4) exhibiting activity index 90.12 ± 0.07 % (<em>p</em> < 0.05) with 1C50 = 5.43 ± 0.02 mM and binding affinity equal to -9.93 Kcal/mol. The complex has lower α-amylase inhibitory potential compared to conventional drug. Predictive pharmacokinetic parameters indicate that the metal complex has desirable drug-like qualities, making as interesting candidates for future therapeutic development.</div></div>","PeriodicalId":374,"journal":{"name":"Journal of Organometallic Chemistry","volume":"1038 ","pages":"Article 123775"},"PeriodicalIF":2.1000,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Synthesis, computational screening, antidiabetic, antibacterial, DNA, pharmacokinetics/ ADMET analysis and molecular docking studies of pentamethylcyclopentadienyl ruthenium(III) carboxylate complex\",\"authors\":\"Rubina Bibi , Sameen Fatima , Jawaria Sadiq , Muhammad Tariq , Ajaz Hussain , Faiz Rasool , Sana Iqbal , Kausar Hussain Shah , Shabbir Hussain , Muhammad Sirajuddin , Muhammad Yar , Khurshid Ayub\",\"doi\":\"10.1016/j.jorganchem.2025.123775\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The current study reports synthesis, characterization, computational investigation and biological evaluation of designed pentamethylcyclopentadienyl ruthenium(III) carboxylate complex [Ru*Cp (TA)Cl]. Structural evaluation has been done <em>via</em> FTIR, UV–Visible, <sup>1</sup>HNMR and elemental analysis. The obtained Δυ (υ<sub>as</sub> COO<sup>-</sup> – υ<sub>sm</sub> COO<sup>-</sup>) findings found as 244 cm<sup>-1</sup>, which explore bidendate mode of carboxylate moiety. Quantum computations were performed utilizing the DTF / B3LYP methodology to determine structural parameters. Vibrational frequency computations were performed using basis set (B3LYP / 6–31 G (d, p) LanL2DZ), based on total energy distribution (TED) of vibrational mode, which was calculated using scaled quantum mechanics (SQM). In FMO calculations, lower energy gap [LUMO<img>HOMO] was used to evaluate global reactivity parameters (GPR), charge transfer, and bioactivity. Structural-activity relationship (SAR) was employed to explain how <em>in vitro</em> biological activity results supported in silico findings. The SSDNA-binding constant 3.3 × 10<sup>6</sup> ± 2.73 M<sup>-1</sup> indicated strong biding potential of [Ru*Cp (TA)Cl] with DNA which was corroborated by docking score -6.62 Kcal/mol. Studied complex has considerable antibacterial potency with <em>Bacillus subtilis</em> (5ZW4) exhibiting activity index 90.12 ± 0.07 % (<em>p</em> < 0.05) with 1C50 = 5.43 ± 0.02 mM and binding affinity equal to -9.93 Kcal/mol. The complex has lower α-amylase inhibitory potential compared to conventional drug. Predictive pharmacokinetic parameters indicate that the metal complex has desirable drug-like qualities, making as interesting candidates for future therapeutic development.</div></div>\",\"PeriodicalId\":374,\"journal\":{\"name\":\"Journal of Organometallic Chemistry\",\"volume\":\"1038 \",\"pages\":\"Article 123775\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-07-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Organometallic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0022328X25002682\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, INORGANIC & NUCLEAR\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Organometallic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0022328X25002682","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
Synthesis, computational screening, antidiabetic, antibacterial, DNA, pharmacokinetics/ ADMET analysis and molecular docking studies of pentamethylcyclopentadienyl ruthenium(III) carboxylate complex
The current study reports synthesis, characterization, computational investigation and biological evaluation of designed pentamethylcyclopentadienyl ruthenium(III) carboxylate complex [Ru*Cp (TA)Cl]. Structural evaluation has been done via FTIR, UV–Visible, 1HNMR and elemental analysis. The obtained Δυ (υas COO- – υsm COO-) findings found as 244 cm-1, which explore bidendate mode of carboxylate moiety. Quantum computations were performed utilizing the DTF / B3LYP methodology to determine structural parameters. Vibrational frequency computations were performed using basis set (B3LYP / 6–31 G (d, p) LanL2DZ), based on total energy distribution (TED) of vibrational mode, which was calculated using scaled quantum mechanics (SQM). In FMO calculations, lower energy gap [LUMOHOMO] was used to evaluate global reactivity parameters (GPR), charge transfer, and bioactivity. Structural-activity relationship (SAR) was employed to explain how in vitro biological activity results supported in silico findings. The SSDNA-binding constant 3.3 × 106 ± 2.73 M-1 indicated strong biding potential of [Ru*Cp (TA)Cl] with DNA which was corroborated by docking score -6.62 Kcal/mol. Studied complex has considerable antibacterial potency with Bacillus subtilis (5ZW4) exhibiting activity index 90.12 ± 0.07 % (p < 0.05) with 1C50 = 5.43 ± 0.02 mM and binding affinity equal to -9.93 Kcal/mol. The complex has lower α-amylase inhibitory potential compared to conventional drug. Predictive pharmacokinetic parameters indicate that the metal complex has desirable drug-like qualities, making as interesting candidates for future therapeutic development.
期刊介绍:
The Journal of Organometallic Chemistry targets original papers dealing with theoretical aspects, structural chemistry, synthesis, physical and chemical properties (including reaction mechanisms), and practical applications of organometallic compounds.
Organometallic compounds are defined as compounds that contain metal - carbon bonds. The term metal includes all alkali and alkaline earth metals, all transition metals and the lanthanides and actinides in the Periodic Table. Metalloids including the elements in Group 13 and the heavier members of the Groups 14 - 16 are also included. The term chemistry includes syntheses, characterizations and reaction chemistry of all such compounds. Research reports based on use of organometallic complexes in bioorganometallic chemistry, medicine, material sciences, homogeneous catalysis and energy conversion are also welcome.
The scope of the journal has been enlarged to encompass important research on organometallic complexes in bioorganometallic chemistry and material sciences, and of heavier main group elements in organometallic chemistry. The journal also publishes review articles, short communications and notes.