Hue-Phuong Trac, Putikam Raghunath, Ming-Chang Lin
{"title":"从头算预测CH3CHI + O2反应中产物立体特异性:syn- vs - anti-CH3CHOO的形成。","authors":"Hue-Phuong Trac, Putikam Raghunath, Ming-Chang Lin","doi":"10.1007/s00894-025-06426-4","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>The stereo-specific production of <i>syn</i>- and <i>anti</i>-CH<sub>3</sub>CHOO conformers from the CH<sub>3</sub>CHI + O<sub>2</sub> reaction has been investigated by ab initio quantum-chemical and statistical theory studies. The results of the studies clearly indicate that the [<i>syn</i>]:[<i>anti</i>] product ratio depends on both temperature and pressure of the reaction system, and is kinetically, rather than thermodynamically, controlled. Most experimental data measured near room temperature at 2–10 Torr He pressure agree with the predicted results in terms of either the absolute rate constants for <i>syn</i>- and <i>anti</i>-CH<sub>3</sub>CHOO production and/or the [<i>syn</i>]:[<i>anti</i>] product ratio. If the stereo-specificity of <i>syn</i>- and <i>anti</i>-CH<sub>3</sub>CHOO formation were controlled thermodynamically, one would predict [<i>syn</i>]:[<i>anti</i>] = 241:1 independent of pressure at 298 K, instead of (80 ± 10):(20 ± 10) measured experimentally or 86:14 predicted theoretically at 5-Torr He pressure.</p><h3>Methods</h3><p>All calculations were performed using Gaussian 16 software. Geometry, frequency, and IRC analysis calculations were conducted at the B3LYP/Aug-cc-PVTZ level of theory. The potential energy surface of the system was computed at the CCSD(T)/Aug-cc-PVTZ//B3LYP/Aug-cc-PVTZ level. The rate constants for individual product channels in the reaction, including the direct production of IO + CH<sub>3</sub>CHO and the collisional deactivation of the excited CH<sub>3</sub>CHIO<sub>2</sub>* intermediate formed by the association of CH<sub>3</sub>CHI with O<sub>2</sub>, were predicted by statistical theory calculations using the Variflex code.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 8","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12254064/pdf/","citationCount":"0","resultStr":"{\"title\":\"Ab initio prediction for product stereo-specificity in the CH3CHI + O2 reaction: formation of syn- vs anti-CH3CHOO\",\"authors\":\"Hue-Phuong Trac, Putikam Raghunath, Ming-Chang Lin\",\"doi\":\"10.1007/s00894-025-06426-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>The stereo-specific production of <i>syn</i>- and <i>anti</i>-CH<sub>3</sub>CHOO conformers from the CH<sub>3</sub>CHI + O<sub>2</sub> reaction has been investigated by ab initio quantum-chemical and statistical theory studies. The results of the studies clearly indicate that the [<i>syn</i>]:[<i>anti</i>] product ratio depends on both temperature and pressure of the reaction system, and is kinetically, rather than thermodynamically, controlled. Most experimental data measured near room temperature at 2–10 Torr He pressure agree with the predicted results in terms of either the absolute rate constants for <i>syn</i>- and <i>anti</i>-CH<sub>3</sub>CHOO production and/or the [<i>syn</i>]:[<i>anti</i>] product ratio. If the stereo-specificity of <i>syn</i>- and <i>anti</i>-CH<sub>3</sub>CHOO formation were controlled thermodynamically, one would predict [<i>syn</i>]:[<i>anti</i>] = 241:1 independent of pressure at 298 K, instead of (80 ± 10):(20 ± 10) measured experimentally or 86:14 predicted theoretically at 5-Torr He pressure.</p><h3>Methods</h3><p>All calculations were performed using Gaussian 16 software. Geometry, frequency, and IRC analysis calculations were conducted at the B3LYP/Aug-cc-PVTZ level of theory. The potential energy surface of the system was computed at the CCSD(T)/Aug-cc-PVTZ//B3LYP/Aug-cc-PVTZ level. The rate constants for individual product channels in the reaction, including the direct production of IO + CH<sub>3</sub>CHO and the collisional deactivation of the excited CH<sub>3</sub>CHIO<sub>2</sub>* intermediate formed by the association of CH<sub>3</sub>CHI with O<sub>2</sub>, were predicted by statistical theory calculations using the Variflex code.</p></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 8\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-07-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12254064/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06426-4\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06426-4","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Ab initio prediction for product stereo-specificity in the CH3CHI + O2 reaction: formation of syn- vs anti-CH3CHOO
Context
The stereo-specific production of syn- and anti-CH3CHOO conformers from the CH3CHI + O2 reaction has been investigated by ab initio quantum-chemical and statistical theory studies. The results of the studies clearly indicate that the [syn]:[anti] product ratio depends on both temperature and pressure of the reaction system, and is kinetically, rather than thermodynamically, controlled. Most experimental data measured near room temperature at 2–10 Torr He pressure agree with the predicted results in terms of either the absolute rate constants for syn- and anti-CH3CHOO production and/or the [syn]:[anti] product ratio. If the stereo-specificity of syn- and anti-CH3CHOO formation were controlled thermodynamically, one would predict [syn]:[anti] = 241:1 independent of pressure at 298 K, instead of (80 ± 10):(20 ± 10) measured experimentally or 86:14 predicted theoretically at 5-Torr He pressure.
Methods
All calculations were performed using Gaussian 16 software. Geometry, frequency, and IRC analysis calculations were conducted at the B3LYP/Aug-cc-PVTZ level of theory. The potential energy surface of the system was computed at the CCSD(T)/Aug-cc-PVTZ//B3LYP/Aug-cc-PVTZ level. The rate constants for individual product channels in the reaction, including the direct production of IO + CH3CHO and the collisional deactivation of the excited CH3CHIO2* intermediate formed by the association of CH3CHI with O2, were predicted by statistical theory calculations using the Variflex code.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.