{"title":"机器学习驱动的高灵敏度干扰素γ检测双模SERS横向流动适体试验。","authors":"Jiali Jin, Jiaying Hu, Jiliang Yan, Fei Deng, Shaoyue Jin, Danting Yang","doi":"10.1021/acssynbio.5c00244","DOIUrl":null,"url":null,"abstract":"<p><p>Interferon-γ (IFN-γ), a key pro-inflammatory cytokine, is widely recognized as a critical biomarker for diagnosing and monitoring various immune-related conditions. However, its typically low concentrations in biological fluids─at the picogram-per-milliliter (pg/mL) level─necessitate ultrasensitive detection strategies for early clinical intervention. Here, we report a dual-mode surface-enhanced Raman scattering (SERS) lateral flow aptamer assay that employs a competitive binding mechanism between IFN-γ and its complementary DNA for aptamer recognition. This platform combines visual readout with quantitative SERS detection, enabling accurate measurement over a wide dynamic range (5-2000 pg/mL) with a limit of detection of 2.23 pg/mL. Clinical validation using human serum samples confirmed the assay's ability to distinguish IFN-γ concentration tiers─negative, low, and medium/high─with high diagnostic accuracy, supporting its potential for point-of-care applications. To enhance interpretability and classification performance, the system was integrated with machine learning algorithms, including multinomial logistic regression (MLR), multilayer perceptron, and random forest. Among these, the MLR model achieved the best performance, with an overall accuracy of 94.12% and a macro-average area under the ROC curve of 1.00. It further demonstrated group-specific sensitivities and specificities of 100% for the negative group, 83.33%/100% for the low group, and 100%/90.91% for the medium/high group. This dual-mode, machine learning-assisted biosensing platform offers a robust and practical solution for ultrasensitive cytokine detection, bridging the gap between analytical performance and clinical applicability in precision diagnostics.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":"2845-2853"},"PeriodicalIF":3.7000,"publicationDate":"2025-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Dual-Mode SERS Lateral Flow Aptamer Assay with Machine Learning-Driven Highly Sensitive Interferon-γ Detection.\",\"authors\":\"Jiali Jin, Jiaying Hu, Jiliang Yan, Fei Deng, Shaoyue Jin, Danting Yang\",\"doi\":\"10.1021/acssynbio.5c00244\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Interferon-γ (IFN-γ), a key pro-inflammatory cytokine, is widely recognized as a critical biomarker for diagnosing and monitoring various immune-related conditions. However, its typically low concentrations in biological fluids─at the picogram-per-milliliter (pg/mL) level─necessitate ultrasensitive detection strategies for early clinical intervention. Here, we report a dual-mode surface-enhanced Raman scattering (SERS) lateral flow aptamer assay that employs a competitive binding mechanism between IFN-γ and its complementary DNA for aptamer recognition. This platform combines visual readout with quantitative SERS detection, enabling accurate measurement over a wide dynamic range (5-2000 pg/mL) with a limit of detection of 2.23 pg/mL. Clinical validation using human serum samples confirmed the assay's ability to distinguish IFN-γ concentration tiers─negative, low, and medium/high─with high diagnostic accuracy, supporting its potential for point-of-care applications. To enhance interpretability and classification performance, the system was integrated with machine learning algorithms, including multinomial logistic regression (MLR), multilayer perceptron, and random forest. Among these, the MLR model achieved the best performance, with an overall accuracy of 94.12% and a macro-average area under the ROC curve of 1.00. It further demonstrated group-specific sensitivities and specificities of 100% for the negative group, 83.33%/100% for the low group, and 100%/90.91% for the medium/high group. This dual-mode, machine learning-assisted biosensing platform offers a robust and practical solution for ultrasensitive cytokine detection, bridging the gap between analytical performance and clinical applicability in precision diagnostics.</p>\",\"PeriodicalId\":26,\"journal\":{\"name\":\"ACS Synthetic Biology\",\"volume\":\" \",\"pages\":\"2845-2853\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-07-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Synthetic Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1021/acssynbio.5c00244\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/7/7 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.5c00244","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/7/7 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Interferon-γ (IFN-γ), a key pro-inflammatory cytokine, is widely recognized as a critical biomarker for diagnosing and monitoring various immune-related conditions. However, its typically low concentrations in biological fluids─at the picogram-per-milliliter (pg/mL) level─necessitate ultrasensitive detection strategies for early clinical intervention. Here, we report a dual-mode surface-enhanced Raman scattering (SERS) lateral flow aptamer assay that employs a competitive binding mechanism between IFN-γ and its complementary DNA for aptamer recognition. This platform combines visual readout with quantitative SERS detection, enabling accurate measurement over a wide dynamic range (5-2000 pg/mL) with a limit of detection of 2.23 pg/mL. Clinical validation using human serum samples confirmed the assay's ability to distinguish IFN-γ concentration tiers─negative, low, and medium/high─with high diagnostic accuracy, supporting its potential for point-of-care applications. To enhance interpretability and classification performance, the system was integrated with machine learning algorithms, including multinomial logistic regression (MLR), multilayer perceptron, and random forest. Among these, the MLR model achieved the best performance, with an overall accuracy of 94.12% and a macro-average area under the ROC curve of 1.00. It further demonstrated group-specific sensitivities and specificities of 100% for the negative group, 83.33%/100% for the low group, and 100%/90.91% for the medium/high group. This dual-mode, machine learning-assisted biosensing platform offers a robust and practical solution for ultrasensitive cytokine detection, bridging the gap between analytical performance and clinical applicability in precision diagnostics.
期刊介绍:
The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism.
Topics may include, but are not limited to:
Design and optimization of genetic systems
Genetic circuit design and their principles for their organization into programs
Computational methods to aid the design of genetic systems
Experimental methods to quantify genetic parts, circuits, and metabolic fluxes
Genetic parts libraries: their creation, analysis, and ontological representation
Protein engineering including computational design
Metabolic engineering and cellular manufacturing, including biomass conversion
Natural product access, engineering, and production
Creative and innovative applications of cellular programming
Medical applications, tissue engineering, and the programming of therapeutic cells
Minimal cell design and construction
Genomics and genome replacement strategies
Viral engineering
Automated and robotic assembly platforms for synthetic biology
DNA synthesis methodologies
Metagenomics and synthetic metagenomic analysis
Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction
Gene optimization
Methods for genome-scale measurements of transcription and metabolomics
Systems biology and methods to integrate multiple data sources
in vitro and cell-free synthetic biology and molecular programming
Nucleic acid engineering.