机器学习驱动的高灵敏度干扰素γ检测双模SERS横向流动适体试验。

IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
ACS Synthetic Biology Pub Date : 2025-07-18 Epub Date: 2025-07-07 DOI:10.1021/acssynbio.5c00244
Jiali Jin, Jiaying Hu, Jiliang Yan, Fei Deng, Shaoyue Jin, Danting Yang
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引用次数: 0

摘要

干扰素-γ (IFN-γ)是一种关键的促炎细胞因子,被广泛认为是诊断和监测各种免疫相关疾病的关键生物标志物。然而,它在生物体液中的浓度通常很低──仅为皮克/毫升(pg/mL)水平──因此需要采用超灵敏的检测策略进行早期临床干预。在这里,我们报告了一种双模式表面增强拉曼散射(SERS)横向流动适体检测,该检测采用IFN-γ与其互补DNA之间的竞争结合机制来识别适体。该平台将视觉读数与定量SERS检测相结合,能够在宽动态范围(5-2000 pg/mL)内进行准确测量,检测限为2.23 pg/mL。使用人血清样本进行的临床验证证实,该检测方法能够区分IFN-γ浓度等级──阴性、低和中/高──具有很高的诊断准确性,支持其在护理点应用的潜力。为了提高可解释性和分类性能,系统集成了机器学习算法,包括多项逻辑回归(MLR)、多层感知器和随机森林。其中,MLR模型表现最好,总体准确率为94.12%,ROC曲线下宏观平均面积为1.00。阴性组的组间敏感性和特异性为100%,低组为83.33%/100%,中/高组为100%/90.91%。这种双模式、机器学习辅助的生物传感平台为超灵敏细胞因子检测提供了一个强大而实用的解决方案,弥合了精确诊断中分析性能和临床适用性之间的差距。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Dual-Mode SERS Lateral Flow Aptamer Assay with Machine Learning-Driven Highly Sensitive Interferon-γ Detection.

Interferon-γ (IFN-γ), a key pro-inflammatory cytokine, is widely recognized as a critical biomarker for diagnosing and monitoring various immune-related conditions. However, its typically low concentrations in biological fluids─at the picogram-per-milliliter (pg/mL) level─necessitate ultrasensitive detection strategies for early clinical intervention. Here, we report a dual-mode surface-enhanced Raman scattering (SERS) lateral flow aptamer assay that employs a competitive binding mechanism between IFN-γ and its complementary DNA for aptamer recognition. This platform combines visual readout with quantitative SERS detection, enabling accurate measurement over a wide dynamic range (5-2000 pg/mL) with a limit of detection of 2.23 pg/mL. Clinical validation using human serum samples confirmed the assay's ability to distinguish IFN-γ concentration tiers─negative, low, and medium/high─with high diagnostic accuracy, supporting its potential for point-of-care applications. To enhance interpretability and classification performance, the system was integrated with machine learning algorithms, including multinomial logistic regression (MLR), multilayer perceptron, and random forest. Among these, the MLR model achieved the best performance, with an overall accuracy of 94.12% and a macro-average area under the ROC curve of 1.00. It further demonstrated group-specific sensitivities and specificities of 100% for the negative group, 83.33%/100% for the low group, and 100%/90.91% for the medium/high group. This dual-mode, machine learning-assisted biosensing platform offers a robust and practical solution for ultrasensitive cytokine detection, bridging the gap between analytical performance and clinical applicability in precision diagnostics.

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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
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