舌头专家:基于深度学习的细粒度舌头表型提取和分类算法平台。

IF 6.2 Q2 GENETICS & HEREDITY
Phenomics (Cham, Switzerland) Pub Date : 2025-03-26 eCollection Date: 2025-04-01 DOI:10.1007/s43657-024-00210-9
Ting Li, Ling Zuo, Pengyu Wang, Liangfu Yang, Zijia Liu, Xu Wang, Jingze Tan, Yajun Yang, Jiucun Wang, Yong Zhou, Li Jin, Guangtao Zhai, Jianxin Chen, Qianqian Peng, Guoqing Zhang, Sijia Wang
{"title":"舌头专家:基于深度学习的细粒度舌头表型提取和分类算法平台。","authors":"Ting Li, Ling Zuo, Pengyu Wang, Liangfu Yang, Zijia Liu, Xu Wang, Jingze Tan, Yajun Yang, Jiucun Wang, Yong Zhou, Li Jin, Guangtao Zhai, Jianxin Chen, Qianqian Peng, Guoqing Zhang, Sijia Wang","doi":"10.1007/s43657-024-00210-9","DOIUrl":null,"url":null,"abstract":"<p><p>Tongue analysis holds promise for disease detection and health monitoring, especially in traditional Chinese medicine. However, its subjectivity hinders clinical applications. Deep learning offers a path for automated tongue diagnosis, yet existing methods struggle to capture subtle details, and the lack of large datasets hampers the development of robust and generalizable models. To address these challenges, we introduce TonguExpert (https://www.biosino.org/TonguExpert), a free platform for archiving, analyzing, and extracting phenotypes from tongue images. Our deep learning framework integrates cutting-edge techniques for tongue segmentation and phenotype extraction. TonguExpert analyzes a massive dataset of 5992 tongue images from a Chinese population and extracts 773 phenotypes including five predicted labels and their probabilities, 355 global features (entire tongue, tongue body, and tongue coating) and 408 local features (fissures and tooth marks) in a unified process. Besides, 580 additional features for five tongue subregions are also available for future study. Notably, TonguExpert outperforms manual classification methods, achieving high accuracy (ROC-AUC 0.89-0.99 for color, 0.97 for fissures, 0.88 for tooth marks). Additionally, the model generalizes well to predict new phenotypes (e.g., greasy coating) using external datasets. This allows the model to learn from a broader spectrum of data, potentially improving its overall performance. We also release the largest publicly available dataset of tongue images and phenotypes, which is invaluable for advancing automated analysis and clinical applications of tongue diagnosis. In summary, this research advances automated tongue diagnosis, paving the way for wider clinical adoption and potentially expanding the applications in the future.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s43657-024-00210-9.</p>","PeriodicalId":74435,"journal":{"name":"Phenomics (Cham, Switzerland)","volume":"5 2","pages":"109-122"},"PeriodicalIF":6.2000,"publicationDate":"2025-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12209108/pdf/","citationCount":"0","resultStr":"{\"title\":\"TonguExpert: A Deep Learning-Based Algorithm Platform for Fine-Grained Extraction and Classification of Tongue Phenotypes.\",\"authors\":\"Ting Li, Ling Zuo, Pengyu Wang, Liangfu Yang, Zijia Liu, Xu Wang, Jingze Tan, Yajun Yang, Jiucun Wang, Yong Zhou, Li Jin, Guangtao Zhai, Jianxin Chen, Qianqian Peng, Guoqing Zhang, Sijia Wang\",\"doi\":\"10.1007/s43657-024-00210-9\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Tongue analysis holds promise for disease detection and health monitoring, especially in traditional Chinese medicine. However, its subjectivity hinders clinical applications. Deep learning offers a path for automated tongue diagnosis, yet existing methods struggle to capture subtle details, and the lack of large datasets hampers the development of robust and generalizable models. To address these challenges, we introduce TonguExpert (https://www.biosino.org/TonguExpert), a free platform for archiving, analyzing, and extracting phenotypes from tongue images. Our deep learning framework integrates cutting-edge techniques for tongue segmentation and phenotype extraction. TonguExpert analyzes a massive dataset of 5992 tongue images from a Chinese population and extracts 773 phenotypes including five predicted labels and their probabilities, 355 global features (entire tongue, tongue body, and tongue coating) and 408 local features (fissures and tooth marks) in a unified process. Besides, 580 additional features for five tongue subregions are also available for future study. Notably, TonguExpert outperforms manual classification methods, achieving high accuracy (ROC-AUC 0.89-0.99 for color, 0.97 for fissures, 0.88 for tooth marks). Additionally, the model generalizes well to predict new phenotypes (e.g., greasy coating) using external datasets. This allows the model to learn from a broader spectrum of data, potentially improving its overall performance. We also release the largest publicly available dataset of tongue images and phenotypes, which is invaluable for advancing automated analysis and clinical applications of tongue diagnosis. In summary, this research advances automated tongue diagnosis, paving the way for wider clinical adoption and potentially expanding the applications in the future.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s43657-024-00210-9.</p>\",\"PeriodicalId\":74435,\"journal\":{\"name\":\"Phenomics (Cham, Switzerland)\",\"volume\":\"5 2\",\"pages\":\"109-122\"},\"PeriodicalIF\":6.2000,\"publicationDate\":\"2025-03-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12209108/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Phenomics (Cham, Switzerland)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1007/s43657-024-00210-9\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/4/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Phenomics (Cham, Switzerland)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s43657-024-00210-9","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/4/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

摘要

舌头分析有望用于疾病检测和健康监测,特别是在传统中医中。然而,其主观性阻碍了临床应用。深度学习为自动舌头诊断提供了一条途径,但现有的方法难以捕捉细微的细节,而且缺乏大型数据集阻碍了鲁棒性和可泛化模型的发展。为了应对这些挑战,我们推出了TonguExpert (https://www.biosino.org/TonguExpert),这是一个免费的平台,用于从舌头图像中存档、分析和提取表型。我们的深度学习框架集成了舌头分割和表型提取的尖端技术。TonguExpert分析了5992张来自中国人群的舌头图像,并在一个统一的过程中提取了773种表型,包括5种预测标签及其概率,355种全局特征(整个舌头、舌体和舌苔)和408种局部特征(裂隙和牙印)。此外,还有580个额外的特征可供未来研究。值得注意的是,TonguExpert优于人工分类方法,实现了很高的准确率(颜色的ROC-AUC为0.89-0.99,裂缝为0.97,牙印为0.88)。此外,该模型可以很好地使用外部数据集来预测新的表型(例如,油腻涂层)。这使得模型可以从更广泛的数据中学习,从而潜在地提高其整体性能。我们还发布了最大的公开可用的舌图像和表型数据集,这对于推进舌诊断的自动化分析和临床应用是无价的。总之,这项研究推进了自动舌头诊断,为更广泛的临床应用铺平了道路,并有可能在未来扩大应用范围。补充信息:在线版本包含补充资料,下载地址为10.1007/s43657-024-00210-9。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
TonguExpert: A Deep Learning-Based Algorithm Platform for Fine-Grained Extraction and Classification of Tongue Phenotypes.

Tongue analysis holds promise for disease detection and health monitoring, especially in traditional Chinese medicine. However, its subjectivity hinders clinical applications. Deep learning offers a path for automated tongue diagnosis, yet existing methods struggle to capture subtle details, and the lack of large datasets hampers the development of robust and generalizable models. To address these challenges, we introduce TonguExpert (https://www.biosino.org/TonguExpert), a free platform for archiving, analyzing, and extracting phenotypes from tongue images. Our deep learning framework integrates cutting-edge techniques for tongue segmentation and phenotype extraction. TonguExpert analyzes a massive dataset of 5992 tongue images from a Chinese population and extracts 773 phenotypes including five predicted labels and their probabilities, 355 global features (entire tongue, tongue body, and tongue coating) and 408 local features (fissures and tooth marks) in a unified process. Besides, 580 additional features for five tongue subregions are also available for future study. Notably, TonguExpert outperforms manual classification methods, achieving high accuracy (ROC-AUC 0.89-0.99 for color, 0.97 for fissures, 0.88 for tooth marks). Additionally, the model generalizes well to predict new phenotypes (e.g., greasy coating) using external datasets. This allows the model to learn from a broader spectrum of data, potentially improving its overall performance. We also release the largest publicly available dataset of tongue images and phenotypes, which is invaluable for advancing automated analysis and clinical applications of tongue diagnosis. In summary, this research advances automated tongue diagnosis, paving the way for wider clinical adoption and potentially expanding the applications in the future.

Supplementary information: The online version contains supplementary material available at 10.1007/s43657-024-00210-9.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信