Chu Anh Van, Tran Quang Hai, Nguyen Xuan Ha, Nguyen Thi Hanh, Nguyen Ngoc Linh, Ninh The Son
{"title":"二酚的抗自由基效能:密度泛函理论、分子对接和ADMET谱","authors":"Chu Anh Van, Tran Quang Hai, Nguyen Xuan Ha, Nguyen Thi Hanh, Nguyen Ngoc Linh, Ninh The Son","doi":"10.1002/poc.70029","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>Diphlorethol is a typical phlorotannin with multipharmacological activities. However, its antiradical activity is still ambiguous. The current study aims to evaluate its radical scavenging using thermodynamics and kinetics-based density functional theory (DFT) calculations. The results indicated that the main radical scavenging mechanism in gas and lipid was the formal hydrogen transfer (FHT), and that for the aqueous medium was the sequential proton loss-electron transfer (SPLET). The kinetic reactions with HOO˙ and CH<sub>3</sub>OO˙ radicals resulted in the <i>k</i><sub>overall</sub> (overall rate constant) of 1.2 × 10<sup>8</sup>–1.6 × 10<sup>8</sup> M<sup>−1</sup> s<sup>−1</sup> in water and 3.0 × 10<sup>0</sup>–2.7 × 10<sup>1</sup> M<sup>−1</sup> s<sup>−1</sup> in pentyl ethanoate. 4- and 6-OH acted as active centers for radical scavenging. The molecular docking simulation suggested that diphlorethol could serve as a potential inhibitor of the oxidative activity of the Keap1 enzyme, particularly through its interaction with the crucial amino acid residue Arg415. The ADMET (absorption, distribution, metabolism, excretion, and toxicity) analysis demonstrated that diphlorethol exhibited favorable pharmacokinetic properties, including good water solubility, high intestinal absorption, and moderate tissue distribution. Diphlorethol did not induce hepatotoxicity or skin sensitization and showed no inhibitory effects on hERG I or hERG II channels, supporting its potential as a safe antioxidant candidate for further development.</p>\n </div>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"38 8","pages":""},"PeriodicalIF":1.9000,"publicationDate":"2025-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Antiradical Potency of Diphlorethol: DFT (Density Functional Theory), Molecular Docking, and ADMET Profile\",\"authors\":\"Chu Anh Van, Tran Quang Hai, Nguyen Xuan Ha, Nguyen Thi Hanh, Nguyen Ngoc Linh, Ninh The Son\",\"doi\":\"10.1002/poc.70029\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>Diphlorethol is a typical phlorotannin with multipharmacological activities. However, its antiradical activity is still ambiguous. The current study aims to evaluate its radical scavenging using thermodynamics and kinetics-based density functional theory (DFT) calculations. The results indicated that the main radical scavenging mechanism in gas and lipid was the formal hydrogen transfer (FHT), and that for the aqueous medium was the sequential proton loss-electron transfer (SPLET). The kinetic reactions with HOO˙ and CH<sub>3</sub>OO˙ radicals resulted in the <i>k</i><sub>overall</sub> (overall rate constant) of 1.2 × 10<sup>8</sup>–1.6 × 10<sup>8</sup> M<sup>−1</sup> s<sup>−1</sup> in water and 3.0 × 10<sup>0</sup>–2.7 × 10<sup>1</sup> M<sup>−1</sup> s<sup>−1</sup> in pentyl ethanoate. 4- and 6-OH acted as active centers for radical scavenging. The molecular docking simulation suggested that diphlorethol could serve as a potential inhibitor of the oxidative activity of the Keap1 enzyme, particularly through its interaction with the crucial amino acid residue Arg415. The ADMET (absorption, distribution, metabolism, excretion, and toxicity) analysis demonstrated that diphlorethol exhibited favorable pharmacokinetic properties, including good water solubility, high intestinal absorption, and moderate tissue distribution. Diphlorethol did not induce hepatotoxicity or skin sensitization and showed no inhibitory effects on hERG I or hERG II channels, supporting its potential as a safe antioxidant candidate for further development.</p>\\n </div>\",\"PeriodicalId\":16829,\"journal\":{\"name\":\"Journal of Physical Organic Chemistry\",\"volume\":\"38 8\",\"pages\":\"\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2025-07-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Physical Organic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/poc.70029\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, ORGANIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Physical Organic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/poc.70029","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, ORGANIC","Score":null,"Total":0}
Antiradical Potency of Diphlorethol: DFT (Density Functional Theory), Molecular Docking, and ADMET Profile
Diphlorethol is a typical phlorotannin with multipharmacological activities. However, its antiradical activity is still ambiguous. The current study aims to evaluate its radical scavenging using thermodynamics and kinetics-based density functional theory (DFT) calculations. The results indicated that the main radical scavenging mechanism in gas and lipid was the formal hydrogen transfer (FHT), and that for the aqueous medium was the sequential proton loss-electron transfer (SPLET). The kinetic reactions with HOO˙ and CH3OO˙ radicals resulted in the koverall (overall rate constant) of 1.2 × 108–1.6 × 108 M−1 s−1 in water and 3.0 × 100–2.7 × 101 M−1 s−1 in pentyl ethanoate. 4- and 6-OH acted as active centers for radical scavenging. The molecular docking simulation suggested that diphlorethol could serve as a potential inhibitor of the oxidative activity of the Keap1 enzyme, particularly through its interaction with the crucial amino acid residue Arg415. The ADMET (absorption, distribution, metabolism, excretion, and toxicity) analysis demonstrated that diphlorethol exhibited favorable pharmacokinetic properties, including good water solubility, high intestinal absorption, and moderate tissue distribution. Diphlorethol did not induce hepatotoxicity or skin sensitization and showed no inhibitory effects on hERG I or hERG II channels, supporting its potential as a safe antioxidant candidate for further development.
期刊介绍:
The Journal of Physical Organic Chemistry is the foremost international journal devoted to the relationship between molecular structure and chemical reactivity in organic systems. It publishes Research Articles, Reviews and Mini Reviews based on research striving to understand the principles governing chemical structures in relation to activity and transformation with physical and mathematical rigor, using results derived from experimental and computational methods. Physical Organic Chemistry is a central and fundamental field with multiple applications in fields such as molecular recognition, supramolecular chemistry, catalysis, photochemistry, biological and material sciences, nanotechnology and surface science.