2022年乌克兰入侵前后多药耐药细菌之间的高度遗传相关性。

IF 10.4 1区 生物学 Q1 GENETICS & HEREDITY
Francois Lebreton, Viacheslav Kondratiuk, Valentyn Kovalchuk, Niels Pfennigwerth, Ting L Luo, Brendan T Jones, Nadiia Fomina, Frieder Fuchs, Jörg B Hans, Jessica Eisfeld, Ana Ong, Sören Gatermann, Jason W Bennett, Patrick Mc Gann
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引用次数: 0

摘要

背景:俄罗斯在2022年入侵乌克兰给那里的医院带来了巨大的压力。其后果之一是,在乌克兰境内和乌克兰侨民中,由耐多药生物引起的感染出现了惊人的增加。这些mdro的原始来源仍然不清楚,尽管怀疑是医院起源。在这里,我们分析了在入侵前后从乌克兰收集的鲍曼不动杆菌和铜绿假单胞菌,以更好地了解它们的关系和起源。方法:对在乌克兰或欧洲其他国家住院的223例乌克兰患者培养的167株鲍曼不动杆菌和93株铜绿假单胞菌进行基因组分析。在2014年至2021年期间,在入侵之前培养了53株分离株,其余207株在入侵之后培养。结果:高度遗传相关的广泛耐药(XDR)克隆在入侵前和入侵后被发现。鲍曼不动杆菌分离株包含三种序列类型(STs),包括产碳青霉烯酶的ST-2菌株(blaOXA-23)和ST-78菌株(blaOXA-72),以及携带ESBL blaGES-11的ST-400菌株。铜绿假单胞菌分离株包含3个STs: ST-773携带blaNDM-1, ST-1047携带blaIMP-1, ST-244。总的来说,与碳青霉烯酶携带相关的移动遗传元件得到了充分的表征。值得注意的是,入侵后ST-773和ST-1047铜绿假单胞菌在群体感应调节因子LasR中具有宿主适应的特征,具有多重功能丧失突变,已知可调节免疫反应并在感染动物模型中提供生存优势。结论:自2022年以来在乌克兰和整个欧洲流行的XDR流行病克隆与来自乌克兰的历史菌株具有密切的遗传关系。在某些情况下,可以推断与乌克兰境内的医疗设施有直接联系。这些数据表明,监测工作应侧重于追踪乌克兰医院内的医院传播,而感染控制工作正因俄罗斯持续入侵而中断。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
High genetic relatedness between multidrug resistant bacteria before and after the 2022 invasion of Ukraine.

Background: The Russian invasion of Ukraine in 2022 has placed extraordinary pressure on hospitals there. One consequence of this has been the alarming increase in infections caused by multi-drug resistant organisms (MDROs), both within Ukraine and among the Ukrainian diaspora. The original source of these MDROs remains obscure although nosocomial origin is suspected. Here, we analyzed a collection of Acinetobacter baumannii and Pseudomonas aeruginosa collected from Ukraine before and after the invasion to glean a greater understanding of their relationship and origins.

Methods: Genomic analysis was conducted on 167 A. baumannii and 93 P. aeruginosa cultured from 223 Ukrainian patients hospitalized in Ukraine or other European countries. Fifty-three isolates were cultured between 2014 and 2021, prior to the invasion, and the remaining 207 after.

Results: Highly genetically related extensively-drug resistant (XDR) clones were identified that spanned the pre- and post-invasion periods. For A. baumannii, isolates encompassed three sequence types (STs), including carbapenemase-producing strains from ST-2 (blaOXA-23) and ST-78 (blaOXA-72), as well as ST-400 carrying the ESBL blaGES-11. For P. aeruginosa, isolates encompassed three STs: ST-773 carrying blaNDM-1, ST-1047 carrying blaIMP-1, and ST-244. For all, the mobile genetic elements associated with carbapenemase carriage were fully characterized. Notably, post-invasion ST-773 and ST-1047 P. aeruginosa had a signature of host adaptation with multiple loss-of-function mutations in the quorum-sensing regulator LasR, known to modulate immune responses and provide survival advantages in animal models of infection.

Conclusions: XDR epidemic clones circulating in Ukraine and across Europe since 2022 share a close genetic relationship to historical strains from Ukraine. In some cases, direct links to medical facilities within Ukraine can be inferred. These data suggest that surveillance efforts should focus on tracking nosocomial transmission within Ukrainian hospitals while infection control efforts are being disrupted by the ongoing Russian invasion.

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来源期刊
Genome Medicine
Genome Medicine GENETICS & HEREDITY-
CiteScore
20.80
自引率
0.80%
发文量
128
审稿时长
6-12 weeks
期刊介绍: Genome Medicine is an open access journal that publishes outstanding research applying genetics, genomics, and multi-omics to understand, diagnose, and treat disease. Bridging basic science and clinical research, it covers areas such as cancer genomics, immuno-oncology, immunogenomics, infectious disease, microbiome, neurogenomics, systems medicine, clinical genomics, gene therapies, precision medicine, and clinical trials. The journal publishes original research, methods, software, and reviews to serve authors and promote broad interest and importance in the field.
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