结合生物信息学、网络药理学和分子对接等方法,探讨雷公藤红素抗抑郁作用的机制。

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Yong-Li Jiang, Xin-Shang Wang, Fei-Yan Wang, Mei-Ling Zheng, Le Yang, Yu-Chen Jin, Ying Gao, Qing-Juan Guo, Da-Ke Song, Li Luo, Shui-Bing Liu
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引用次数: 0

摘要

雷公藤红素,一种从雷公藤根部提取的天然化合物。F.,在动物模型中显示出减轻抑郁症的潜在功效,但其具体靶点仍不清楚。本研究旨在确定雷公藤红素在重度抑郁症(MDD)中的主要作用靶点和可能的信号通路。结合GEO数据集、网络药理学、分子对接、分子动力学模拟等技术,对雷公藤红素发挥抗抑郁作用的机制进行分析。我们的分析共确定了1064个药物靶点和3386个疾病相关靶点,从而产生209个共享靶点。对蛋白-蛋白相互作用(PPI)网络的拓扑检查发现了10个核心靶点,包括STAT3、IL6、ALB、HSP90AA1、HIF1A、CASP3、EGFR、BCL2L1、INS和IGF1。GO和KEGG通路富集分析表明,celastrol通过调节炎症、凋亡、氧化应激和PI3K/Akt、MAPK和HIF1信号通路相关基因发挥抗抑郁作用。此外,分子对接和分子动力学模拟结果表明,雷公藤红素与HIF1A具有较强的结合亲和力。综上所述,本研究有效预测了雷公藤红素治疗抑郁症可能的分子靶点和信号通路,为进一步研究雷公藤红素治疗重度抑郁症的机制提供了有希望的途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Using integrated bioinformatics, network pharmacology and molecular docking to explore the mechanisms underlying the antidepressant effect of celastrol.

Celastrol, a natural compound derived from the root of Tripterygium wilfordii Hook. F., has shown potential efficacy in alleviating depression in animal models, yet its specific target remains unelucidated. The present investigation aimed to identify the principal targets and possible signaling pathways of celastrol in major depressive disorder (MDD). Using a combination of GEO datasets, network pharmacology, molecular docking and molecular dynamics simulation techniques, we conducted an analysis to uncover the underlying mechanism through which celastrol exerts its antidepressant effects. Our analysis identified a total of 1064 drug targets and 3386 disease-related targets, resulting in 209 shared targets. A topological examination of the protein-protein interaction (PPI) network revealed 10 core targets, including STAT3, IL6, ALB, HSP90AA1, HIF1A, CASP3, EGFR, BCL2L1, INS and IGF1. GO and KEGG pathway enrichment analyses demonstrated that celastrol exerted antidepressant effects through regulating genes related to inflammation, apoptosis, oxidative stress and the PI3K/Akt, MAPK, and HIF1 signaling pathways. Furthermore, the results of molecular docking and molecular dynamics simulations revealed the strong binding affinity between celastrol and HIF1A. In conclusion, this study effectively predicted the possible molecular targets and signaling pathways of celastrol in the treatment of depression, providing a promising approach for future investigations into its mechanisms against MDD.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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