基于孟德尔随机化研究和生物信息学分析的膜性肾病线粒体动力学相关基因的鉴定、机制探索和临床验证。

IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Qiuyuan Shao, Nan Li, Huimin Qiu, Min Zhao, Chunming Jiang, Cheng Wan
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引用次数: 0

摘要

背景:膜性肾病(MN)是一种常见的肾小球疾病,但其与线粒体动力学(MD)的关系尚不清楚。本研究探讨了线粒体动力学相关基因(mdg)在MN发病中的机制参与。方法:采用综合生物信息学分析,包括孟德尔随机化、机器学习算法和单细胞RNA测序(scRNA-seq),对转录组数据集(GSE200828、GSE73953和GSE241302)进行查询。利用逆转录定量聚合酶链反应(RT-qPCR)进一步验证了核心千年发展目标。结果:四个关键MDGs-RTTN, MYO9A, USP40和nfkbi -成为关键决定因素,主要富集在嗅觉转导途径中。图模型表现出优异的诊断性能(曲线下面积[AUC] = 1)。17种免疫细胞亚群,包括调节性T细胞和活化的树突状细胞,在MN中表现出显著的浸润差异。调控网络分析显示,ATF2由RTTN和MYO9A共同调控,同时RTTN通过hsa-mir-431-5p驱动ELOA-AS1的调节。scRNA-seq分析发现间充质上皮过渡细胞是关键的影响因素,假时间轨迹图显示了不同的时间表达谱:NFKBIZ(最初上调,随后下降)、USP40(逐渐波动)和RTTN(持续低表达)。RT-qPCR结果证实,与对照组相比,MN样品中所有四个基因的显著下调(p < 0.05)。结论:这些发现阐明了mdg介导的MN机制的分子基础,揭示了新的诊断生物标志物和治疗靶点。这些数据强调了线粒体动力学和免疫失调在MN进展中的相互作用,为精准医疗策略提供了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification Exploring the Mechanism and Clinical Validation of Mitochondrial Dynamics-Related Genes in Membranous Nephropathy Based on Mendelian Randomization Study and Bioinformatics Analysis.

Background: Membranous nephropathy (MN), a prevalent glomerular disorder, remains poorly understood in terms of its association with mitochondrial dynamics (MD). This study investigated the mechanistic involvement of mitochondrial dynamics-related genes (MDGs) in the pathogenesis of MN. Methods: Comprehensive bioinformatics analyses-encompassing Mendelian randomization, machine-learning algorithms, and single-cell RNA sequencing (scRNA-seq)-were employed to interrogate transcriptomic datasets (GSE200828, GSE73953, and GSE241302). Core MDGs were further validated using reverse-transcription quantitative polymerase chain reaction (RT-qPCR). Results: Four key MDGs-RTTN, MYO9A, USP40, and NFKBIZ-emerged as critical determinants, predominantly enriched in olfactory transduction pathways. A nomogram model exhibited exceptional diagnostic performance (area under the curve [AUC] = 1). Seventeen immune cell subsets, including regulatory T cells and activated dendritic cells, demonstrated significant differential infiltration in MN. Regulatory network analyses revealed ATF2 co-regulation mediated by RTTN and MYO9A, along with RTTN-driven modulation of ELOA-AS1 via hsa-mir-431-5p. scRNA-seq analysis identified mesenchymal-epithelial transitioning cells as key contributors, with pseudotime trajectory mapping indicating distinct temporal expression profiles: NFKBIZ (initial upregulation followed by decline), USP40 (gradual fluctuation), and RTTN (persistently low expression). RT-qPCR results corroborated a significant downregulation of all four genes in MN samples compared to controls (p < 0.05). Conclusions: These findings elucidate the molecular underpinnings of MDG-mediated mechanisms in MN, revealing novel diagnostic biomarkers and therapeutic targets. The data underscore the interplay between mitochondrial dynamics and immune dysregulation in MN progression, providing a foundation for precision medicine strategies.

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来源期刊
Biomedicines
Biomedicines Biochemistry, Genetics and Molecular Biology-General Biochemistry,Genetics and Molecular Biology
CiteScore
5.20
自引率
8.50%
发文量
2823
审稿时长
8 weeks
期刊介绍: Biomedicines (ISSN 2227-9059; CODEN: BIOMID) is an international, scientific, open access journal on biomedicines published quarterly online by MDPI.
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